View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_high_5 (Length: 480)
Name: NF18506_high_5
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 45089624 - 45090099
Alignment:
| Q |
18 |
ttgcttttaacatgaaaaagggtaacgagtacaattgcatatgtagggtgccaatgacagaaatgataggaaaacaaggggaaaaaaggctttcaaaaat |
117 |
Q |
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| T |
45089624 |
ttgcttttaacatgaaaaagggtaacgagtacaattgcatatgtagggtgccaatgacagaaatgataggaaaacaaggggaaaaaaggctttcaaaaat |
45089723 |
T |
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| Q |
118 |
aggaatggagcaaatgttagtatccatgggtcaccaaccatgtggtgctattactttatggaactttccaacatggctaaggaacctcattgcacatgat |
217 |
Q |
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| T |
45089724 |
aggaatggagcaaatgttagtatccatgggtcaccaaccatgtggtgctattactttatggaactttccaacatggctaaggaacctcattgcacatgat |
45089823 |
T |
|
| Q |
218 |
atcgacggagaagaaagacctgatccagttgacatggctactatggaaggt--------------------atggttttgtaataattttatatgatcaa |
297 |
Q |
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| T |
45089824 |
atcgacggagaagaaagacctgatccagttgacatagctactatggaaggtagtgtagtgtagtggagtacatggttttgtaataattttatatgatcaa |
45089923 |
T |
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| Q |
298 |
cttgttctaaaatgatgaatattttgtttactagtttatagagatagagaaaggggagtagcgagatataatgaattcagaagaaacatgctaatgatcc |
397 |
Q |
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| T |
45089924 |
cttgttataaaatgatgaatattttgtttactagtttatagagatagagaaaggggagtagcgagatataatgaattcagaagaaacatgctaatgatcc |
45090023 |
T |
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| Q |
398 |
caattagtaagtgggaagatttaacagatgatgaagaggttattgaagctctcaaagaggtatatgatgatgatgt |
473 |
Q |
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| T |
45090024 |
caattagtaagtgggaagatttaacagatgatgaagaggttaatgaagctctcaaagaggtatatgatgatgatgt |
45090099 |
T |
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