View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_high_9 (Length: 394)
Name: NF18506_high_9
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 30432997 - 30432829
Alignment:
| Q |
19 |
ccaatatggtgtgaattaatagttggtggtttcaattaactataggtacaaactagactgtcatttactatctttgtctcttaggatgacaacttcatta |
118 |
Q |
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| T |
30432997 |
ccaatatggtgtgaattaatagttggtggtttcaattaactatagggacaaactagattgtcatttactatctttgtctcttaggataacaacttcatta |
30432898 |
T |
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| Q |
119 |
atatgttttatttcctcaaagcaaccaactaaatacaggggtaggacaactgcattaaatgttgggatg |
187 |
Q |
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| T |
30432897 |
atatgttttatttcctcaaagcaaccaactaaatataggggtaggacaattgcattaaatgttgggatg |
30432829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 30432681 - 30432538
Alignment:
| Q |
236 |
taaccaccaccaataagttaattttataacatctataatctcttccgcttcatagttctttgaagaaaaaataaccttattcctagcctctcatatcttt |
335 |
Q |
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| T |
30432681 |
taactaccaccaataagttaattttataacatctatgatctcttccgcttcatagttctttgaagaaaaaataaccttattcctagcctctcatatcttt |
30432582 |
T |
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| Q |
336 |
caaattgcaccgtacgaaataagatttaacacttttcaatggat |
379 |
Q |
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| T |
30432581 |
caaattgtaccgtgcgaaataagatttaacacttttcaatggat |
30432538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 30432749 - 30432711
Alignment:
| Q |
194 |
gcgggtcaaaagtctagttaaatcttaagacaatgaagc |
232 |
Q |
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| T |
30432749 |
gcgggtcaagagtctagttaaatcttaagacaatgaagc |
30432711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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