View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18506_low_1 (Length: 706)

Name: NF18506_low_1
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18506_low_1
NF18506_low_1
[»] chr5 (3 HSPs)
chr5 (172-669)||(41367675-41368159)
chr5 (30-138)||(41367569-41367681)
chr5 (576-658)||(38734641-38734723)
[»] chr3 (3 HSPs)
chr3 (195-535)||(44281519-44281859)
chr3 (576-658)||(54449796-54449878)
chr3 (599-658)||(25750882-25750941)
[»] chr2 (1 HSPs)
chr2 (576-658)||(6407949-6408031)
[»] chr1 (3 HSPs)
chr1 (576-658)||(8245391-8245473)
chr1 (579-658)||(23391933-23392012)
chr1 (614-658)||(38645197-38645241)
[»] chr6 (2 HSPs)
chr6 (605-658)||(278187-278240)
chr6 (617-658)||(33940956-33940997)
[»] chr4 (2 HSPs)
chr4 (576-658)||(53142140-53142222)
chr4 (599-656)||(38516105-38516162)
[»] chr8 (1 HSPs)
chr8 (594-658)||(39141900-39141964)
[»] chr7 (2 HSPs)
chr7 (614-658)||(31446663-31446707)
chr7 (606-658)||(9417182-9417234)
[»] scaffold1786 (1 HSPs)
scaffold1786 (599-658)||(1190-1249)


Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 172 - 669
Target Start/End: Original strand, 41367675 - 41368159
Alignment:
Q  172 atttaagcaaaattttgtggaaatgacagaaaacactgctgtggattaagcagagaagagaatcaatgagcttggttacaagcaagaactaagaagagaa 271  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41367675 atttgagcaaaattttgtggaaatgacagaaaacactgctatggattaagcagagaagagaatcaatgagcttggttacaagcaagaactaagaagagaa 41367774  T
Q  272 atggtttttgttctattgccaacttgatataaattttctcaaacttaaataacnnnnnnncttcttcaaatttaatttgttacatttttccatttatcat 371  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  41367775 atggtttttgttctattgccaccttgatataaattttctcaaacttaaataactttttttcttcttcaaatttaatttgttacatttttccatttatcat 41367874  T
Q  372 gaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaaatcacacctctatatggttctagccttcaatattcaagcctg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||| |||    
T  41367875 gaagactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcacggaa-------------atggttctagccttcaatattcaagtctg 41367961  T
Q  472 caactcttgtttgggatggctagttgtgtgttttcttcacttagtttgttgggattgcaatggcttagatgagcaactcttatgtgggcacaactctaac 571  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  41367962 caactcttatttgggatggctagttgtgttttttcttcacttagtttgttgggattgcaatggcttagatgagcaactcttctgtcggcacaactctaac 41368061  T
Q  572 cgaaaaatatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattattgtgttaaataa 669  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41368062 tgaaaaatatttcgacacaattagattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattattgtgttaaataa 41368159  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 41367569 - 41367681
Alignment:
Q  30 aataatgtttgttgttggtaataatcgatgtaa----aaagctttattgaatgttgttggaatgaaaattaaggaaaggaatcgcacatgatcaggaaca 125  Q
    |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41367569 aataatgtttgttgttggtaataatcgatgtaattaaaaagctttattgaatgttgttggaatgaaaattaaggaaaggaatcgcacatgatcagcaaca 41367668  T
Q  126 actttaatttgag 138  Q
    |||||||||||||    
T  41367669 actttaatttgag 41367681  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 658
Target Start/End: Original strand, 38734641 - 38734723
Alignment:
Q  576 aaatatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||| |||||| | |||| ||||| |||||||| ||||||||||||  ||||||||||||||||| ||||  |||||||    
T  38734641 aaatatttagacacactcacatcaaatgcaaaaattaaaagagaataaaactaaatgatgttgattgatgtgatctaattatt 38734723  T

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Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 195 - 535
Target Start/End: Original strand, 44281519 - 44281859
Alignment:
Q  195 tgacagaaaacactgctgtggattaagcagagaagagaatcaatgagcttggttacaagcaagaactaagaagagaaatggtttttgttctattgccaac 294  Q
    ||||||||||||  ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  44281519 tgacagaaaacatagctatggattcagcagagaagagactcaatgagcttggttacaagcaagaactaagaagagaaatggtttttgttcttttgccatc 44281618  T
Q  295 ttgatataaattttctcaaacttaaa-taacnnnnnnncttcttcaaatttaatttgttacatttttccatttatcatgaagactatgttcaaaactctc 393  Q
    |||||  |||  ||||||||  |||| ||||        || ||   | | ||| |||||  |||||| ||||||  || |||||||||||||||||||     
T  44281619 ttgatcaaaaaattctcaaaaataaagtaacattttt--tttttggtactaaatctgttaattttttctatttattgtgcagactatgttcaaaactctt 44281716  T
Q  394 gcgatagcattttcaacaatgacacttttcacggaaatcacacctctatatggttctagccttcaatattcaag-cctgcaactcttgttt-gggatggc 491  Q
    ||||||||||||||||||||||| |||||||| | |||||| ||||| ||||||||||||||||  ||| || | ||||||| |||||||| |||||||     
T  44281717 gcgatagcattttcaacaatgacgcttttcactggaatcacgcctctgtatggttctagccttctgtatgcaggccctgcaagtcttgtttggggatggg 44281816  T
Q  492 tagttgtgtgttttcttcacttagtttgttgggattgcaatggc 535  Q
    | ||||| || ||||||||||| |||||||||||||||||||||    
T  44281817 ttgttgtttg-tttcttcacttggtttgttgggattgcaatggc 44281859  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 658
Target Start/End: Original strand, 54449796 - 54449878
Alignment:
Q  576 aaatatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||| |||||| | |||||||||| |||||||| ||||||||||||  ||||||| ||||||||| ||||  |||||||    
T  54449796 aaatatttagacacattcacattaaatgcaaaaattaaaagagaataaaactaaatgatattgattgatgtgatctaattatt 54449878  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 25750941 - 25750882
Alignment:
Q  599 aaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    ||||| |||||||| |||| |||||||| ||||||||||||||||| | ||| |||||||    
T  25750941 aaatgcaaaaattaaaagaaaataaaattaaatgatgttgattgatgtaatttaattatt 25750882  T

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Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 658
Target Start/End: Complemental strand, 6408031 - 6407949
Alignment:
Q  576 aaatatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||| |||||| |||||| ||||| |||||||| ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  6408031 aaatatttagacacacttacatcaaatgcaaaaattaaaagagaataaaactaaatgatgttgattgatgtgatttaattatt 6407949  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 576 - 658
Target Start/End: Original strand, 8245391 - 8245473
Alignment:
Q  576 aaatatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||| | |||| | |||| ||||| |||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||    
T  8245391 aaatatttaggcacactcacatcaaatgcaaaaattaaaagagaataaaattaaatgatgttgattgatgtgatttaattatt 8245473  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 579 - 658
Target Start/End: Complemental strand, 23392012 - 23391933
Alignment:
Q  579 tatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    ||||| |||||| | |||| ||||| ||||| || ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  23392012 tatttagacacactcacatcaaatgcaaaaactaaaagagaataaaactaaatgatgttgattgatgtgattcaattatt 23391933  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 658
Target Start/End: Original strand, 38645197 - 38645241
Alignment:
Q  614 aagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    ||||||||||||| |||||||||  |||||| |||||||||||||    
T  38645197 aagagaataaaattaaatgatgtcaattgatgtgattaaattatt 38645241  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 605 - 658
Target Start/End: Original strand, 278187 - 278240
Alignment:
Q  605 aaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  278187 aaaaattaaaagagaataaaatcaaatgacgttgattgatgtgattaaattatt 278240  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 658
Target Start/End: Original strand, 33940956 - 33940997
Alignment:
Q  617 agaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||||| ||||||||||||||||| |||||||||||||    
T  33940956 agaataaaattaaatgatgttgattgatgtgattaaattatt 33940997  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 658
Target Start/End: Original strand, 53142140 - 53142222
Alignment:
Q  576 aaatatttcgacacaattacattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||||||| |||||| | | || ||||| |||||||| |||| |||||||| ||||||||||||||||| ||||| |||||||    
T  53142140 aaatatttagacacactgatatcaaatgtaaaaattaaaagaaaataaaattaaatgatgttgattgatgtgatttaattatt 53142222  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 38516105 - 38516162
Alignment:
Q  599 aaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaatta 656  Q
    ||||| |||| ||| ||||||||||||| ||||||||||||||||| ||||| |||||    
T  38516105 aaatgaaaaatttaaaagagaataaaattaaatgatgttgattgatgtgatttaatta 38516162  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 39141964 - 39141900
Alignment:
Q  594 acattaaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    |||| ||||| |||||||| ||||||||||||| |||| || ||||||||||||||| |||||||    
T  39141964 acatcaaatgcaaaaattaaaagagaataaaattaaataatattgattgatatgatttaattatt 39141900  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 614 - 658
Target Start/End: Original strand, 31446663 - 31446707
Alignment:
Q  614 aagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  31446663 aagagaataaaattaaatgatgttgattgatatgaataaattatt 31446707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 658
Target Start/End: Original strand, 9417182 - 9417234
Alignment:
Q  606 aaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||  |||||||    
T  9417182 aaaattaaaagagaataaaattaaatgatgttgattaatatgatctaattatt 9417234  T

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Target: scaffold1786 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 658
Target Start/End: Original strand, 1190 - 1249
Alignment:
Q  599 aaatggaaaaattacaagagaataaaatcaaatgatgttgattgatatgattaaattatt 658  Q
    ||||| ||||| || ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  1190 aaatgcaaaaactaaaagagaataaaactaaatgatgttgattgatgtgattcaattatt 1249  T

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