View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_low_10 (Length: 378)
Name: NF18506_low_10
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 6173936 - 6173610
Alignment:
| Q |
22 |
gaagccactgaaactcagagtgagtcagtcaagatgctgcttgatgaattaagggagttggtattttcaagaaacctattgaaacatttactcaatgatg |
121 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
6173936 |
gaagctactgaaactcagagtgagtcaatcaagatgctgctggatgaattaagggatttggtattttcaagaaacttattgaaacatttacccaatgatg |
6173837 |
T |
|
| Q |
122 |
tgactcttggagaagaggtgaaagctttgttagttaaattcaattctagagctaatgagctttctgagaaacaaagttctggtattactgatttcaccaa |
221 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6173836 |
tgactcttggagaagaggtgaaagctttattagttaaactcaattatagagctaatgagctttctgagaaacaaagttctggtattactgatttcgccag |
6173737 |
T |
|
| Q |
222 |
aatctttatagactacacattgaatattgatgaaagaaaactgagcaatgttactcttaaacttcttaatgtggatcataaagattcaatatccaagctt |
321 |
Q |
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|||||| | ||| |||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
6173736 |
aatcttcacagaagccacagtgaatattgatgaaggaaaactgggcaatgttactcttcaacatcttaatgtggatcataaagattcaatgtccaagctt |
6173637 |
T |
|
| Q |
322 |
caagcatccaaagacaagataatgaag |
348 |
Q |
| |
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|||||||||||| ||||||| |||||| |
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| T |
6173636 |
caagcatccaaatacaagattatgaag |
6173610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 57 - 348
Target Start/End: Complemental strand, 6135846 - 6135555
Alignment:
| Q |
57 |
gctgcttgatgaattaagggagttggtattttcaagaaacctattgaaacatttactcaatgatgtgactcttggagaagaggtgaaagctttgttagtt |
156 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
6135846 |
gctgcttgatgaattgagggagttggcattttcaagaaacttattgaaacatttacccaatgatgtgactctaggagaagaggtgaaagctttattagtt |
6135747 |
T |
|
| Q |
157 |
aaattcaattctagagctaatgagctttctgagaaacaaagttctggtattactgatttcaccaaaatctttatagactacacattgaatattgatgaaa |
256 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| | ||| ||| |||||||||||||| |
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| T |
6135746 |
aaactcaattatagagctaatgagctttctgagaaacaaagttccggtattactgatttcactagaatcttcacagaagctacagtgaatattgatgaag |
6135647 |
T |
|
| Q |
257 |
gaaaactgagcaatgttactcttaaacttcttaatgtggatcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
348 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6135646 |
gaaaactgagcaatgttactcttcaacaacttaatgtggatcataaagattcaatatccaagcttcaagcatcgaaagacaagataatgaag |
6135555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 50 - 348
Target Start/End: Complemental strand, 37616577 - 37616288
Alignment:
| Q |
50 |
tcaagatgctgcttgatgaattaagggagttggtattttcaagaaacctattgaaacatttactcaatgatgtgactcttggagaagaggtgaaagcttt |
149 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
37616577 |
tcaagatgctgcttgatgaattaagggagttggcattttcaagaaatctattgaaacatttacccaaa---------cttggagaagaggtgaaagcttt |
37616487 |
T |
|
| Q |
150 |
gttagttaaattcaattctagagctaatgagctttctgagaaacaaagttctggtattactgatttcaccaaaatctttatagactacacattgaatatt |
249 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
37616486 |
gttagttaaattcaattatagagctaatgagctttctgagaaacaaagttctggtattattgttttcaccaaaatctttatagacaccacattgaatatt |
37616387 |
T |
|
| Q |
250 |
gatgaaagaaaactgagcaatgttactcttaaacttctt-aatgtggatcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
348 |
Q |
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|||||| |||||| |||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
37616386 |
gatgaaggaaaaccgagcaatgttacccttaaacatcttaaatgtggatcataaagtttcaatatccaagcttcaagca-ataaagacaagataatgaag |
37616288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 22083133 - 22083191
Alignment:
| Q |
289 |
aatgtggatcataaagattcaatatccaagcttcaagcatccaaagacaagataatgaag |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22083133 |
aatgtggatcataaagattcaatatccaagcttcaagca-ataaagacaagataatgaag |
22083191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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