View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_low_11 (Length: 377)
Name: NF18506_low_11
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 37746104 - 37746192
Alignment:
| Q |
280 |
ggatgctaaaatttgtttacattatcattatgaattaagaagcaggtgaacgatcgacatataatttgccttttatattttatattctt |
368 |
Q |
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| T |
37746104 |
ggatgctaaaatttgtttacattatcattatgaattaagaagcaggtgaacaatcgacatataatttgccttttatattttattttctt |
37746192 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 37745950 - 37746020
Alignment:
| Q |
119 |
tcatggatgggtgttatattgtgactttctttgtatttggctgttgatctgacccttcaaccttactagga |
189 |
Q |
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| T |
37745950 |
tcatggatgggtgttatattgtgactttctttgtatttggctgttgatctgacccttcaaccttactagga |
37746020 |
T |
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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 37745873 - 37745926
Alignment:
| Q |
66 |
aacttgtttaattaagtttgattttcattttcattttggtatttgtgtgttaat |
119 |
Q |
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| T |
37745873 |
aacttgtttaattaagtttgattttcattttcattttggtatttgtgtgttaat |
37745926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37745811 - 37745846
Alignment:
| Q |
1 |
gtgttattaccttgttcttagtatttcttaatgcta |
36 |
Q |
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| T |
37745811 |
gtgttattaccttgttcttggtatttcttaatgcta |
37745846 |
T |
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