View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18506_low_12 (Length: 360)

Name: NF18506_low_12
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18506_low_12
NF18506_low_12
[»] chr1 (2 HSPs)
chr1 (10-341)||(9581935-9582262)
chr1 (10-155)||(9587493-9587638)
[»] chr5 (1 HSPs)
chr5 (107-156)||(29022133-29022182)
[»] chr4 (5 HSPs)
chr4 (101-148)||(533098-533145)
chr4 (27-73)||(548271-548317)
chr4 (95-156)||(645434-645495)
chr4 (104-145)||(6007763-6007804)
chr4 (104-148)||(1547373-1547417)
[»] chr8 (1 HSPs)
chr8 (106-151)||(17642611-17642656)
[»] chr7 (1 HSPs)
chr7 (95-156)||(15091276-15091337)
[»] chr2 (1 HSPs)
chr2 (96-137)||(13641998-13642039)
[»] chr6 (1 HSPs)
chr6 (15-83)||(10578786-10578854)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 9581935 - 9582262
Alignment:
Q  10 aagaaaataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgag 109  Q
    |||||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||||| || |||||||||| ||||   ||||||||||| |||||    
T  9581935 aagaaaataggagaccgttggtgatagagagaaactgtttggagacgacagaaagagacttgaagtagaaaccattgttgatgtcgttgtcgtcaatgag 9582034  T
Q  110 gaatttgaagacggattcccaacactcgttaggtaaataaaaatctgttggtggaaccgccattgtgttttttcttcttctttttgagtcactagacatt 209  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||    
T  9582035 gaatttgaagacggattcccaacagtcattaggtaaataaaaatctgttgctgcaaccgccattgcgtttcttcttcttctttttgagtcactagacatt 9582134  T
Q  210 gatatttttctaaaaggagtcatcggtgactgaaccttactattgtttgagatagcagagaggttgtgtgactgccttgtgaagcaagcttgcttcgtgg 309  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||    
T  9582135 gatatttttctataaggagtcatcgatgactgaaccttacaattgtttgagatagcagagaggttgtgtggctgccttgtgaagcaagcttg----gtgg 9582230  T
Q  310 tgttcgtcttgcgatttaacaacaggagtttg 341  Q
    ||||||||||| | ||||||||||| ||||||    
T  9582231 tgttcgtcttgaggtttaacaacagcagtttg 9582262  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 9587493 - 9587638
Alignment:
Q  10 aagaaaataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaaccatggttggcatcgttgtcgtcgatgag 109  Q
    |||||||||||| ||| ||||| | |||||| |||||||||||||| |||||||||||||| || |||| ||||| |||| | |||||| |||| ||||     
T  9587493 aagaaaataggagaccattggtgacggagagaaactgtttggagacgacagaaagagacttgaagtagacaccatcgttgacgtcgttgccgtctatgaa 9587592  T
Q  110 gaatttgaagacggattcccaacactcgttaggtaaataaaaatct 155  Q
    |||||||||||| ||||||||||  || || |||||| ||||||||    
T  9587593 gaatttgaagacagattcccaacggtcattgggtaaagaaaaatct 9587638  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 29022133 - 29022182
Alignment:
Q  107 gaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 156  Q
    |||||||||||||| | ||||||||||||||| ||||||||||| |||||    
T  29022133 gaggaatttgaagatgcattcccaacactcgtcaggtaaataaagatctg 29022182  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 533098 - 533145
Alignment:
Q  101 gtcgatgaggaatttgaagacggattcccaacactcgttaggtaaata 148  Q
    |||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  533098 gtcgatgacgaatttgaagacagattcccaacactcgtcgggtaaata 533145  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 548271 - 548317
Alignment:
Q  27 ttggtaatggagagtaactgtttggagacaacagaaagagacttcaa 73  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  548271 ttggtgatggagagaaactgttttgagacaacagagagagacttcaa 548317  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 645434 - 645495
Alignment:
Q  95 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 156  Q
    |||||||| |||||||||| |||||||  || ||||||| || | |||||||||||||||||    
T  645434 gttgtcgttgatgaggaatctgaagacacatacccaacaatcataaggtaaataaaaatctg 645495  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 6007763 - 6007804
Alignment:
Q  104 gatgaggaatttgaagacggattcccaacactcgttaggtaa 145  Q
    |||||||||||||||||  ||||||||||| |||||||||||    
T  6007763 gatgaggaatttgaagatagattcccaacattcgttaggtaa 6007804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 1547417 - 1547373
Alignment:
Q  104 gatgaggaatttgaagacggattcccaacactcgttaggtaaata 148  Q
    ||||| |||||||||||  |||||||||||||||| |||||||||    
T  1547417 gatgatgaatttgaagatagattcccaacactcgtcaggtaaata 1547373  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 17642656 - 17642611
Alignment:
Q  106 tgaggaatttgaagacggattcccaacactcgttaggtaaataaaa 151  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||    
T  17642656 tgaggaatttgaagacagactcccaacactcatcaggtaaataaaa 17642611  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 15091337 - 15091276
Alignment:
Q  95 gttgtcgtcgatgaggaatttgaagacggattcccaacactcgttaggtaaataaaaatctg 156  Q
    |||||||| ||||| |||| |||||||| ||||||||||||| |  |||||||| |||||||    
T  15091337 gttgtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaatagaaatctg 15091276  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 13641998 - 13642039
Alignment:
Q  96 ttgtcgtcgatgaggaatttgaagacggattcccaacactcg 137  Q
    ||||||| |||||| ||||||||||| |||||||||||||||    
T  13641998 ttgtcgtggatgagaaatttgaagaccgattcccaacactcg 13642039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 10578854 - 10578786
Alignment:
Q  15 aataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaacca 83  Q
    ||||||| || |||||| |||||||| || ||||||||||| | ||| ||||| ||||||||| |||||    
T  10578854 aataggagactgttggttatggagaggaattgtttggagacgagagatagagaattcaaatagtaacca 10578786  T

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