View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18506_low_13 (Length: 344)

Name: NF18506_low_13
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18506_low_13
NF18506_low_13
[»] chr2 (1 HSPs)
chr2 (48-329)||(6915606-6915887)
[»] chr7 (3 HSPs)
chr7 (152-256)||(15040241-15040345)
chr7 (75-148)||(15040064-15040137)
chr7 (261-316)||(15041840-15041895)
[»] chr8 (2 HSPs)
chr8 (103-172)||(43895529-43895598)
chr8 (103-172)||(44305953-44306022)
[»] chr5 (1 HSPs)
chr5 (232-310)||(35856854-35856932)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 48 - 329
Target Start/End: Complemental strand, 6915887 - 6915606
Alignment:
Q  48 agttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6915887 agttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaa 6915788  T
Q  148 atttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915787 atttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagt 6915688  T
Q  248 aaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctca 329  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6915687 aaatgtatcgctggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctca 6915606  T

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Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
Q  152 ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||||     
T  15040241 ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa 15040340  T
Q  252 gtatc 256  Q
    |||||    
T  15040341 gtatc 15040345  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
Q  75 tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 148  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15040064 tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 15040137  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
Q  261 gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15041840 gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat 15041895  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
Q  103 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 172  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  43895529 ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac 43895598  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
Q  103 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 172  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  44305953 ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac 44306022  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
Q  232 taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc 310  Q
    |||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| |||||    
T  35856932 taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc 35856854  T

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