View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18506_low_14 (Length: 317)
Name: NF18506_low_14
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 34352713 - 34353017
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352713 |
ctgaaaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
34352812 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
34352813 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacggcttctgatttcaaaatagcggagaat |
34352912 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352913 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
34353012 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
34353013 |
atgtc |
34353017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 41719110 - 41719414
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719110 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
41719209 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41719210 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacggcttctgatttcaaaatagcggaaaat |
41719309 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41719310 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacataactgatactcttcactttgatg |
41719409 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
41719410 |
atgtc |
41719414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 23319006 - 23319295
Alignment:
| Q |
21 |
gcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtg |
120 |
Q |
| |
|
||||||||||| | ||| |||| || ||||||||||||||||||||||| ||| ||||| |||||||| || ||| |||||||||| ||||| || |
|
|
| T |
23319006 |
gcaaaggagatctaagatgctcttattaaattgtacgaggtcaaatcacttcacgcaagaattttcttaaaaaggaggttctacactctctgaatgtatg |
23319105 |
T |
|
| Q |
121 |
aatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaact |
220 |
Q |
| |
|
| |||| ||| |||| ||||||| || ||| | ||||| |||||| |||| ||||| | || ||| ||| ||||| |||||||| ||||| |||| |
|
|
| T |
23319106 |
agtccatatcaataacaaatcacataaataccataaatacactatttgctcagctcacagcctcagatgtcatgatagctgaaaatgaacgtgcaaaact |
23319205 |
T |
|
| Q |
221 |
tctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgt |
310 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||||||||||||||||| || || || ||||| ||||||| ||||||||||| |
|
|
| T |
23319206 |
tctacttcagagtttacctcattcatatgaacaactcatcatcaacattacaaacaacaatattgctgactctcttcattttgatgatgt |
23319295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 31502590 - 31502529
Alignment:
| Q |
230 |
gagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgata |
291 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
31502590 |
gagtttacaagattcgtatgatcaactcatcatcaacattacaaataataatatagatgata |
31502529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 27878326 - 27878022
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878326 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
27878227 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27878226 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacggcttctgatttcaaaatagcggaaaat |
27878127 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27878126 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacataactgatactcttcactttgatg |
27878027 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
27878026 |
atgtc |
27878022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 30968125 - 30968279
Alignment:
| Q |
23 |
aaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtgaa |
122 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968125 |
aaaggagatctgggatattctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtgaa |
30968224 |
T |
|
| Q |
123 |
tccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactca |
177 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968225 |
tccacatccgtaacgaatcacatcaacaccctgaatacgctattttctcaactca |
30968279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 219 - 311
Target Start/End: Original strand, 30968283 - 30968375
Alignment:
| Q |
219 |
cttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgtc |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
30968283 |
cttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatatctgatactcttcacttttatgatgtc |
30968375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 48 - 310
Target Start/End: Complemental strand, 8480382 - 8480120
Alignment:
| Q |
48 |
aaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtgaatccacatccgtaacggatcacatca |
147 |
Q |
| |
|
||||||||| |||| || ||||| |||| ||||| |||||||| | || || |||||||| |||||| ||||| || ||| ||| ||||||| | |
|
|
| T |
8480382 |
aaattgtacaaggtgaagtcacttcacacaagaattttcttaaaatggagtctttacactctccgaatgaatgaatacatatcgacaacaaatcacataa |
8480283 |
T |
|
| Q |
148 |
acaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaacttctacttcagagtttaccggattcgta |
247 |
Q |
| |
|
||||| ||||||| |||||| |||| ||||| || || ||||||| ||||| |||||| | ||||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
8480282 |
acaccatgaatacactatttgctcagctcacaacatcagatttcatgatagctgaaaataaacgtgcagaacttctacttcagagtttacctgattcata |
8480183 |
T |
|
| Q |
248 |
tgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgt |
310 |
Q |
| |
|
||||||||||||||||||||||||||| || || || | ||| ||||||| ||||||||||| |
|
|
| T |
8480182 |
tgatcaactcatcatcaacattacaaacaacaatattgttgactctcttcattttgatgatgt |
8480120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 8481098 - 8481247
Alignment:
| Q |
10 |
agaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactct |
109 |
Q |
| |
|
|||| ||||| |||| |||||| | ||||||||| || ||||||||||||||||| ||||| || | | ||| ||||| || || |||||||||||||| |
|
|
| T |
8481098 |
agaataagactgcaagggagatctaggatactcttattaaattgtacgaggtcaagtcacttcaaacaataattttcttgaaaaggaggctctacactct |
8481197 |
T |
|
| Q |
110 |
tcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaata |
159 |
Q |
| |
|
|||||| |||||||| ||| |||| ||||||| |||||| |||||| |
|
|
| T |
8481198 |
ccgaatgaatgaatccatatcaataacaaatcacataaacaccatgaata |
8481247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 48701438 - 48701134
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701438 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
48701339 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48701338 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacggcttctgatttcaaaatagcggaaaat |
48701239 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48701238 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacataactgatactcttcactttgatg |
48701139 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
48701138 |
atgtc |
48701134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 42266603 - 42266907
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266603 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
42266702 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42266703 |
tcttcgaatgggtgaatccacatccgtaacagatcacatcaacaccctgaatacgctattttctcaactcacagcttctgatttcaaaatagcggaaaat |
42266802 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266803 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
42266902 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
42266903 |
atgtc |
42266907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 30949792 - 30949496
Alignment:
| Q |
15 |
aagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaa |
114 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949792 |
aagacagcaaaggagatctgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaa |
30949693 |
T |
|
| Q |
115 |
tgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgc |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30949692 |
tgggtgaatccacatccgtaacagatcacatcaacaccctgaatacgctattttctcaactcacagcttctgatttcaaaatagcggaaaatgagcgtgc |
30949593 |
T |
|
| Q |
215 |
tgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgtc |
311 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949592 |
tgaacttctactccagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgtc |
30949496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 309
Target Start/End: Complemental strand, 21514622 - 21514352
Alignment:
| Q |
39 |
actctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtgaatccacatccgtaacgg |
138 |
Q |
| |
|
|||||| |||||||| |||||||||||| ||| |||||| ||||||||||||| | |||||||||||||||||||||| ||||||||| | ||| |
|
|
| T |
21514622 |
actctagtaaaattgaacgaggtcaaattacttcacaactgaatattcttaaaaataaggctctacactcttcgaatgagtgaatccaagacaacaacat |
21514523 |
T |
|
| Q |
139 |
atcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaacttctacttcagagtttacc |
238 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| ||||| || ||||| |||||| |||| |||||| |||| | | | ||||||||||| || |||| | |
|
|
| T |
21514522 |
atcacatcaataccctaaatacgttatttttccaacttacaacttcaaatttcagaataacggaaagtgagagagttaaacttctactttagtttttatc |
21514423 |
T |
|
| Q |
239 |
ggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatg |
309 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||| ||| |||| | | |||||| ||||| |||||||||| |
|
|
| T |
21514422 |
agatttgtatgataaactcatcgtcaacattatcaatgataatgtggttgatacccttcattttgatgatg |
21514352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 139 - 310
Target Start/End: Original strand, 1999723 - 1999894
Alignment:
| Q |
139 |
atcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaacttctacttcagagtttacc |
238 |
Q |
| |
|
||||||| || ||| ||||||| |||||| |||||||||| | || ||||||| |||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1999723 |
atcacataaataccatgaatacactatttcctcaactcacagcctcagatttcacaatagctgaaaatgaacgtgcagaacttctacttcagagtttacc |
1999822 |
T |
|
| Q |
239 |
ggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgt |
310 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| | || || ||||| ||||||| ||||||||||| |
|
|
| T |
1999823 |
tgattcatatgatcaactcatcatcaatattacaatatacaatattgctgactctcttcattttgatgatgt |
1999894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1999628 - 1999695
Alignment:
| Q |
21 |
gcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattctt |
88 |
Q |
| |
|
||||||||||| |||||| |||| || ||||||||||||||||| ||||| |||| ||||| ||||| |
|
|
| T |
1999628 |
gcaaaggagatatgggatgctcttattaaattgtacgaggtcaagtcacttcacacaagaattttctt |
1999695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 5822892 - 5822588
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822892 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
5822793 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5822792 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacagcttctgatttcaaaatagcggaaaat |
5822693 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822692 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
5822593 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
5822592 |
atgtc |
5822588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 2816875 - 2816576
Alignment:
| Q |
12 |
aagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttc |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816875 |
aagaagacagcaaaggagatctgggatactttaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttc |
2816776 |
T |
|
| Q |
112 |
gaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2816775 |
gaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacagcttctgatttcaaaatagcggaaaatgagcg |
2816676 |
T |
|
| Q |
212 |
tgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgtc |
311 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816675 |
tgctgaacttctactttagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgtc |
2816576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 42585671 - 42585960
Alignment:
| Q |
21 |
gcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtg |
120 |
Q |
| |
|
||||||||||| |||||| |||| || ||||||||||||||||| ||||| |||| ||||| |||||||| || |||||||||||||| |||||| || |
|
|
| T |
42585671 |
gcaaaggagatctgggatgctcttattaaattgtacgaggtcaagtcacttcacacaagaattttcttaaaaaggaggctctacactctccgaatgaatg |
42585770 |
T |
|
| Q |
121 |
aatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaact |
220 |
Q |
| |
|
|||||| ||| |||| ||||||| || ||| ||||||| |||||| |||| ||||| | || ||||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
42585771 |
aatccatatcaataacaaatcacataaataccatgaatacactatttgctcagctcacagcctcagatttcacaatagctgaaaatgaacgtgcagaact |
42585870 |
T |
|
| Q |
221 |
tctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgt |
310 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| || || | ||| ||||||| ||||||||||| |
|
|
| T |
42585871 |
tctacttcagagtttacctgattcatatgatcaactcatcatcaatattacaaataacaatattgttgactctcttcattttgatgatgt |
42585960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 47277381 - 47277124
Alignment:
| Q |
22 |
caaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtga |
121 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||| | ||||| | ||||| | |||||| ||||| |||| | ||||||| || ||| |||||| |
|
|
| T |
47277381 |
caaaggagatatgtgatactctaataaaattatacgagatataatcatttcacaataaaatattattaaaaggaagacactacactttttgaacgggtga |
47277282 |
T |
|
| Q |
122 |
atccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgc--tgaac |
219 |
Q |
| |
|
|||||| || ||| ||||||| |||||| |||||| || ||||||||| ||||| |||||| ||| | || ||||||||||||| ||| ||||| |
|
|
| T |
47277281 |
atccacgtca--aacatatcacat-aacaccttgaatatgcaattttctcatctcacaacttctcgttttagaaaagcggaaaatgagtgtgtgttgaac |
47277185 |
T |
|
| Q |
220 |
ttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataa |
280 |
Q |
| |
|
||||||||| ||||| ||| || ||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
47277184 |
ttctacttctgagttaaccatctttgtatgatcacctcatcatcaacattaccaacaataa |
47277124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 25877574 - 25877693
Alignment:
| Q |
48 |
aaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtgaatccacatccgtaacggatcacatca |
147 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||| |||||||| || |||||||| |||||| ||||| |||||||| ||| |||| ||||||| | |
|
|
| T |
25877574 |
aaattgtacgaggtcaagtcacttcacacaagaattttcttaaaaaggaggctctatactctttgaatgaatgaatccatatcaataacaaatcacataa |
25877673 |
T |
|
| Q |
148 |
acaccctgaatacgctattt |
167 |
Q |
| |
|
||||| ||||||| |||||| |
|
|
| T |
25877674 |
acaccatgaatacactattt |
25877693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 9443709 - 9443405
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443709 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
9443610 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9443609 |
tcttcgaatgggtgaatccacatccgtaacagatcacatcaacaccctgaatacgctattttctcaactcacagcttctgatttcaaaatagcggaaaat |
9443510 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9443509 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttaatg |
9443410 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
9443409 |
atgtc |
9443405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 24598085 - 24597829
Alignment:
| Q |
21 |
gcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtg |
120 |
Q |
| |
|
||||||||||| |||||| |||| || ||||||||||||||||| ||||| |||| ||||| |||||||| || |||||||||||||| |||||| || |
|
|
| T |
24598085 |
gcaaaggagatctgggatgctcttattaaattgtacgaggtcaagtcacttcacacaagaattttcttaaaaaggaggctctacactctccgaatgaatg |
24597986 |
T |
|
| Q |
121 |
aatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaact |
220 |
Q |
| |
|
|||||| ||| |||| ||||||| || ||| ||||||| |||||| |||| ||||| | || ||||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
24597985 |
aatccatatcaataacaaatcacataaataccatgaatacactatttgctcagctcacagcctcagatttcacaatagctgaaaatgaacgtgcagaact |
24597886 |
T |
|
| Q |
221 |
tctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataa |
277 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
24597885 |
tctacttcagagtttacctgattcatatgatcaactcatcatcaatattacaaataa |
24597829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 826179 - 826483
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
826179 |
ctgaaaagaagacagcaaaggagatctgggatacactaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
826278 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
826279 |
tcttcgaatgggtgaatccacatccgtaacagatcacatcaacacccttaatacgctattttctcaactcacagcttctgatttcaaaatagcggaaaat |
826378 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
826379 |
gagcgtgctgaacttctacttcagagtttaccagattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
826478 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
826479 |
atgtc |
826483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 39 - 311
Target Start/End: Complemental strand, 13843382 - 13843110
Alignment:
| Q |
39 |
actctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacactcttcgaatgggtgaatccacatccgtaacgg |
138 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || |||| |||||||||||| | ||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
13843382 |
actctaataaaattgtacgaggtcaaataacttcataacataatattcttaaatgggaggctctacactcttagaatgagtgaatccacatcaataacat |
13843283 |
T |
|
| Q |
139 |
atcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaatgagcgtgctgaacttctacttcagagtttacc |
238 |
Q |
| |
|
||||||| || ||| ||||||| |||||||||||||| || ||||||||||||| |||||| |||||||||| || ||||||||||||||| ||| || | |
|
|
| T |
13843282 |
atcacattaagaccttgaatacactattttctcaacttacaacttctgatttcataatagcagaaaatgagcatgttgaacttctacttcatagtatatc |
13843183 |
T |
|
| Q |
239 |
ggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatgatgtc |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||| |
|
|
| T |
13843182 |
aaatttgtatgatcaactcatcatcaacattacaaataacaatatagttgacactcttcactttgatgatgtc |
13843110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 8138075 - 8137771
Alignment:
| Q |
7 |
ctgagaagaagacggcaaaggagatttgggatactctaataaaattgtacgaggtcaaatcactccacaacagaatattcttaaagagaaggctctacac |
106 |
Q |
| |
|
|||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
8138075 |
ctgaaaagaagacaacaaacgagatcggggatactctaataaaattgtacgaggtcaaatcactccgcaacagaatattcttaaagaggaggctctacac |
8137976 |
T |
|
| Q |
107 |
tcttcgaatgggtgaatccacatccgtaacggatcacatcaacaccctgaatacgctattttctcaactcacgacttctgatttcaaaatagcggaaaat |
206 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||| || || | |||||| |||||||||||||||||||| |
|
|
| T |
8137975 |
tcttcgaatgggtgaatccacattcataacagatcacatcaacaccctgaatacggtattttctaaaatcccaacttctaatttcaaaatagcggaaaat |
8137876 |
T |
|
| Q |
207 |
gagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacattacaaataataacatagctgatactcttcactttgatg |
306 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8137875 |
gagcgtgtggaacttctacttcagagtttaccatatttgtatgatcaactcatcatcaacattccaaataataacatagctgatactcttcactttgata |
8137776 |
T |
|
| Q |
307 |
atgtc |
311 |
Q |
| |
|
||||| |
|
|
| T |
8137775 |
atgtc |
8137771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 46452552 - 46452619
Alignment:
| Q |
202 |
aaaatgagcgtgctgaacttctacttcagagtttaccggattcgtatgatcaactcatcatcaacatta |
270 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||| || || |||||| |||||||||||||||||| |
|
|
| T |
46452552 |
aaaatgagtgtgctaaacttctacttcatagtttattaga-tcctatgatgaactcatcatcaacatta |
46452619 |
T |
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