View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18506_low_18 (Length: 275)

Name: NF18506_low_18
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18506_low_18
NF18506_low_18
[»] chr1 (3 HSPs)
chr1 (3-268)||(9581691-9581956)
chr1 (55-269)||(9587261-9587474)
chr1 (3-39)||(9587478-9587514)
[»] chr5 (2 HSPs)
chr5 (81-190)||(32268614-32268723)
chr5 (162-267)||(41900443-41900548)
[»] chr4 (10 HSPs)
chr4 (156-261)||(553767-553872)
chr4 (72-119)||(1524177-1524224)
chr4 (70-110)||(2373334-2373374)
chr4 (151-190)||(1481722-1481761)
chr4 (165-267)||(661860-661962)
chr4 (157-191)||(53760237-53760271)
chr4 (203-268)||(2547292-2547357)
chr4 (223-268)||(3437630-3437675)
chr4 (220-268)||(571331-571379)
chr4 (215-267)||(5106558-5106610)
[»] chr3 (1 HSPs)
chr3 (157-268)||(51763334-51763445)
[»] chr7 (1 HSPs)
chr7 (205-268)||(10615714-10615777)
[»] chr6 (5 HSPs)
chr6 (205-260)||(7132314-7132369)
chr6 (205-260)||(7135237-7135292)
chr6 (205-260)||(7138160-7138215)
chr6 (214-268)||(6417093-6417147)
chr6 (214-267)||(6423907-6423960)
[»] chr2 (1 HSPs)
chr2 (222-268)||(1036620-1036666)
[»] chr8 (1 HSPs)
chr8 (151-191)||(17642873-17642913)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 9581956 - 9581691
Alignment:
Q  3 accaacggtttcctattttctttggctgtgcctgcctgctgtgaatcaacacaccctcttccctatggcctcttccaaagattcaccaacctcacctccc 102  Q
    ||||||||| ||||||||||||| || ||| |  || || |||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||    
T  9581956 accaacggtctcctattttctttcgccgtgtcctccggcagtgaatcaacacgccttcttccctctcgcctcttccaaagattcaccaacctcacctccc 9581857  T
Q  103 tcgacctcacgtggtacataagtaacctcaacgagcttttgtctcaagtctcatgtttcccattgaaactcacatcgctcaatctctcccgccaaactta 202  Q
    |||||||||||||||||| | ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||    
T  9581856 tcgacctcacgtggtacagaggtaacctcaacgagcttctgtatcaagtctcttgtttcccattgaaactcacatcgctcaatctctcccaccaatccta 9581757  T
Q  203 cattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    |||||||||  ||||  |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  9581756 cattcctgctgatggactgcgagctttctccgtaaagattacaacgttgacatctctcatttgttc 9581691  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 9587474 - 9587261
Alignment:
Q  55 accctcttccctatggcctcttccaaagattcaccaacctcacctccctcgacctcacgtggtacataagtaacctcaacgagcttttgtctcaagtctc 154  Q
    |||||||||||| | || |||| |||||||||||||||||||||||||||||||||||| | |||| | || |||||||||||||| | |||||||||||    
T  9587474 accctcttccctctcgcgtctttcaaagattcaccaacctcacctccctcgacctcacg-gctacaaaggtgacctcaacgagcttctatctcaagtctc 9587376  T
Q  155 atgtttcccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgaca 254  Q
     |||||||||||||||||||||||||||||||||||| | ||| | | |||||| |||  ||||||||  ||||||||||||||||||||||| ||||||    
T  9587375 ttgtttcccattgaaactcacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgctttctccttaaagattacaacgttgaca 9587276  T
Q  255 tctctcatttgttca 269  Q
    |||||||||||||||    
T  9587275 tctctcatttgttca 9587261  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 9587514 - 9587478
Alignment:
Q  3 accaacggtttcctattttctttggctgtgcctgcct 39  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  9587514 accaatggtctcctattttctttggctgtgcctgcct 9587478  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 32268723 - 32268614
Alignment:
Q  81 agattcaccaacctcacctccctcgacctcacgtggtacataagtaacctcaacgagcttttgtctcaagtctcatgtttcccattgaaactcacatcgc 180  Q
    |||||||||||||||||||||||||||||| |||| | ||   |||| |||||| ||||| | | |||| ||||  |||| |||||||||||||| || |    
T  32268723 agattcaccaacctcacctccctcgacctctcgtgtttcaacggtaaactcaacaagcttctctgtcaaatctctcgttttccattgaaactcacgtcac 32268624  T
Q  181 tcaatctctc 190  Q
    ||||||||||    
T  32268623 tcaatctctc 32268614  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 41900443 - 41900548
Alignment:
Q  162 ccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctca 261  Q
    ||||||||||||||||| ||||| |||||   |||||    ||| || |||  |||||| |||||||| |||  |||||||||||||||||| |||||||    
T  41900443 ccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctca 41900542  T
Q  262 tttgtt 267  Q
     |||||    
T  41900543 cttgtt 41900548  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 553872 - 553767
Alignment:
Q  156 tgtttcccattgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacat 255  Q
    ||||| |||||||| |||||||| ||| |||||||||   || |   |||||| ||| ||||||||||||||||||||  ||| |||||||||||||| |    
T  553872 tgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacct 553773  T
Q  256 ctctca 261  Q
    ||||||    
T  553772 ctctca 553767  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 1524177 - 1524224
Alignment:
Q  72 ctcttccaaagattcaccaacctcacctccctcgacctcacgtggtac 119  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  1524177 ctcttccaaaggttcaccaacctcacttccctcgatctcacgtggtac 1524224  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 2373334 - 2373374
Alignment:
Q  70 gcctcttccaaagattcaccaacctcacctccctcgacctc 110  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  2373334 gcctcttccaaaggttccccaacctcacctccctcgacctc 2373374  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 1481761 - 1481722
Alignment:
Q  151 tctcatgtttcccattgaaactcacatcgctcaatctctc 190  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  1481761 tctcctgtttcccattgaaactcacatcgctcaatatctc 1481722  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 661962 - 661860
Alignment:
Q  165 ttgaaactcacatcgctcaatctctcccgccaaacttacattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcattt 264  Q
    |||||| |||| || ||||||||||||  ||||||   |||||| ||  |||| |||||||||||||||  | | ||||||||||| || ||||||||||    
T  661962 ttgaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcattt 661863  T
Q  265 gtt 267  Q
    |||    
T  661862 gtt 661860  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 53760237 - 53760271
Alignment:
Q  157 gtttcccattgaaactcacatcgctcaatctctcc 191  Q
    |||||||||||||||||||||| ||||||||||||    
T  53760237 gtttcccattgaaactcacatcactcaatctctcc 53760271  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 2547357 - 2547292
Alignment:
Q  203 cattcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    |||||||||| |||||||||||||||| ||   |||||| | || |||||| ||||||||||||||    
T  2547357 cattcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttc 2547292  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 3437630 - 3437675
Alignment:
Q  223 gagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    |||||||||||  |||||||||||||||||| ||||||| ||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttc 3437675  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 571379 - 571331
Alignment:
Q  220 tgcgagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    ||||||| ||||||  ||| |||||||||||||||||||||| ||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttc 571331  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 5106558 - 5106610
Alignment:
Q  215 tgggttgcgagctttctccttaaagattacaactttgacatctctcatttgtt 267  Q
    ||||||||||||||||||| ||||||| | || |||||||||| ||| |||||    
T  5106558 tgggttgcgagctttctccctaaagatgaaaaatttgacatctatcacttgtt 5106610  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 51763334 - 51763445
Alignment:
Q  157 gtttcccattgaaactcacatcgctcaatctctcccgccaaacttacatt-cctgcacatgggttgcgagctttctccttaaagattacaactttgacat 255  Q
    |||||||||||||||||||||| || |||||||||   ||  ||||| || ||| || |||||||||||| ||| ||   ||||||||||||||||||||    
T  51763334 gtttcccattgaaactcacatcacttaatctctccaaacag-cttacctttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacat 51763432  T
Q  256 ctctcatttgttc 268  Q
    |||||| ||||||    
T  51763433 ctctcacttgttc 51763445  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 10615777 - 10615714
Alignment:
Q  205 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    |||| ||| ||||||| ||||||||||||  |||||||||||||||||| ||||||| ||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttc 10615714  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 7132369 - 7132314
Alignment:
Q  205 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctc 260  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  7132369 ttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctc 7132314  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 7135292 - 7135237
Alignment:
Q  205 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctc 260  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  7135292 ttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctc 7135237  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 7138215 - 7138160
Alignment:
Q  205 ttcctgcacatgggttgcgagctttctccttaaagattacaactttgacatctctc 260  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  7138215 ttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctc 7138160  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 6417147 - 6417093
Alignment:
Q  214 atgggttgcgagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    ||||||| ||||||||||||  ||||| |||||||||||| ||||||| ||||||    
T  6417147 atgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttc 6417093  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 6423960 - 6423907
Alignment:
Q  214 atgggttgcgagctttctccttaaagattacaactttgacatctctcatttgtt 267  Q
    ||||||||||||||||||||  ||| || ||||||||||| ||||||| |||||    
T  6423960 atgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 1036620 - 1036666
Alignment:
Q  222 cgagctttctccttaaagattacaactttgacatctctcatttgttc 268  Q
    ||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttc 1036666  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 17642873 - 17642913
Alignment:
Q  151 tctcatgtttcccattgaaactcacatcgctcaatctctcc 191  Q
    |||| ||||| ||||||||||||||||| ||||||||||||    
T  17642873 tctcttgttttccattgaaactcacatcactcaatctctcc 17642913  T

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