View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_low_22 (Length: 204)
Name: NF18506_low_22
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 34842316 - 34842478
Alignment:
| Q |
17 |
attatgaagattgtacacgtttcaagatgtttgcaacctaattttaatttattttcaatgttatacgaaaaaatcgtgtttaggtaacaatttggttgan |
116 |
Q |
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| T |
34842316 |
attatgaagattgtatacgtttcaagatgtttgcaacataattttaatttattttcaacgttatacaaaaaaatcgtgtttagttaacaatttggttgat |
34842415 |
T |
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| Q |
117 |
nnnnnnngaagtcttaaccctatgattcctaaggacaagaatcatagtttataagatgaaatca |
180 |
Q |
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| T |
34842416 |
ttttttt-aagtcttaaccctatgattcctaaggacaagaatcatagtttataagatgaaatca |
34842478 |
T |
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