View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_low_4 (Length: 494)
Name: NF18506_low_4
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 36 - 274
Target Start/End: Original strand, 30734895 - 30735137
Alignment:
| Q |
36 |
tttatgacatgtctatcaaacagaattta--gtgatgcaatcaaacaaaaagaaatattcataatagaagcatgcaacatcacgatgatatcgatataat |
133 |
Q |
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| T |
30734895 |
tttatgacatgtctatcaaacggaatttatagtgttgcaatcaaacaaaaagaaatattcataatagaagcatgcaacatcacgatgacattgatataat |
30734994 |
T |
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| Q |
134 |
caaagccaacaaacaagaaactcttttttaagggaacggcaaacaaaatgcttcgcaaactaaatgacaacaagcaattaaataattcat--acatagct |
231 |
Q |
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| T |
30734995 |
gaaagccaacaaacaagcaactcttttttaagagaacggcaaacaaaatgcttcgcaaactaaaggacaacaagcggttaaataattcattcacatagct |
30735094 |
T |
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| Q |
232 |
atttcactagttatagttatcggtgtataataaagtagcatgg |
274 |
Q |
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| T |
30735095 |
atttcactagttattgttatctgtgtataataaagtagcatgg |
30735137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 325 - 448
Target Start/End: Original strand, 30735188 - 30735311
Alignment:
| Q |
325 |
cttaaatggttaagaaattggtttgttaaaaggttgttgtcatattcttatgatcatatcttaattaataaatacaatgcattataataaataggtgttg |
424 |
Q |
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| T |
30735188 |
cttaaatggttaagaaattggtttgttaaaaggttgttgtcatgttcctctaatcatatcttaattgataaatacaatatattataataagtaggtgtcg |
30735287 |
T |
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| Q |
425 |
atgttcgatccctaaacacccaca |
448 |
Q |
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| T |
30735288 |
atgttcgatccctaaacacccaca |
30735311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 486
Target Start/End: Original strand, 30735373 - 30735405
Alignment:
| Q |
454 |
aaagttctctcattttagtatcatcttcattgg |
486 |
Q |
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| T |
30735373 |
aaagttctctcattttagtatcatcttcattgg |
30735405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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