View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18506_low_6 (Length: 453)
Name: NF18506_low_6
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18506_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 195 - 437
Target Start/End: Original strand, 44281519 - 44281764
Alignment:
| Q |
195 |
tgacagaaaacactgctgtggattaagcagagaagagaatcaatgagcttggttacaagcaagaactaagaagagaaatggtttttgttcttttgccatc |
294 |
Q |
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| T |
44281519 |
tgacagaaaacatagctatggattcagcagagaagagactcaatgagcttggttacaagcaagaactaagaagagaaatggtttttgttcttttgccatc |
44281618 |
T |
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| Q |
295 |
ttgttcaaaaaattctcaaaaataaagtaaca--nnnnnnnnggtactaaatctgttaattttttcta-ttattgtgcagactatgttcaaaactcttgc |
391 |
Q |
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| T |
44281619 |
ttgatcaaaaaattctcaaaaataaagtaacattttttttttggtactaaatctgttaattttttctatttattgtgcagactatgttcaaaactcttgc |
44281718 |
T |
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| Q |
392 |
gatagcattttcaacaatgacgcttttcactggaatcacgcctctg |
437 |
Q |
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| T |
44281719 |
gatagcattttcaacaatgacgcttttcactggaatcacgcctctg |
44281764 |
T |
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Back To:
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Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 41367675 - 41367800
Alignment:
| Q |
172 |
atttaagcaaaattttgtggaaatgacagaaaacactgctgtggattaagcagagaagagaatcaatgagcttggttacaagcaagaactaagaagagaa |
271 |
Q |
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| T |
41367675 |
atttgagcaaaattttgtggaaatgacagaaaacactgctatggattaagcagagaagagaatcaatgagcttggttacaagcaagaactaagaagagaa |
41367774 |
T |
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| Q |
272 |
atggtttttgttcttttgccatcttg |
297 |
Q |
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| T |
41367775 |
atggtttttgttctattgccaccttg |
41367800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 41367569 - 41367681
Alignment:
| Q |
30 |
aataatgtttgttgttggtaataatcgatgtaa----aaagctttattgaatgttgttggaatgaaaattaaggaaaggaatcgcacatgatcaggaaca |
125 |
Q |
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| T |
41367569 |
aataatgtttgttgttggtaataatcgatgtaattaaaaagctttattgaatgttgttggaatgaaaattaaggaaaggaatcgcacatgatcagcaaca |
41367668 |
T |
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| Q |
126 |
actttaatttgag |
138 |
Q |
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| T |
41367669 |
actttaatttgag |
41367681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 41367877 - 41367928
Alignment:
| Q |
370 |
agactatgttcaaaactcttgcgatagcattttcaacaatgacgcttttcac |
421 |
Q |
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| T |
41367877 |
agactatgttcaaaactctcgcgatagcattttcaacaatgacacttttcac |
41367928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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