View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18506_low_8 (Length: 422)

Name: NF18506_low_8
Description: NF18506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18506_low_8
NF18506_low_8
[»] chr1 (2 HSPs)
chr1 (223-396)||(6159451-6159622)
chr1 (1-160)||(6159694-6159853)
[»] chr2 (4 HSPs)
chr2 (223-405)||(42438488-42438672)
chr2 (333-405)||(18609363-18609435)
chr2 (20-98)||(42438800-42438880)
chr2 (75-154)||(39038948-39039028)
[»] scaffold0098 (1 HSPs)
scaffold0098 (39-97)||(2421-2479)
[»] chr7 (4 HSPs)
chr7 (279-394)||(7394039-7394156)
chr7 (40-98)||(48053975-48054033)
chr7 (58-98)||(2995130-2995170)
chr7 (50-98)||(7393809-7393857)
[»] scaffold0501 (1 HSPs)
scaffold0501 (49-98)||(9120-9169)
[»] scaffold0004 (1 HSPs)
scaffold0004 (30-94)||(120490-120555)
[»] chr8 (1 HSPs)
chr8 (342-399)||(33650192-33650249)
[»] chr5 (4 HSPs)
chr5 (28-98)||(12121512-12121584)
chr5 (298-390)||(18239176-18239268)
chr5 (37-98)||(36736328-36736388)
chr5 (300-349)||(16921280-16921331)
[»] chr3 (2 HSPs)
chr3 (39-91)||(32280150-32280202)
chr3 (58-98)||(459769-459809)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 223 - 396
Target Start/End: Complemental strand, 6159622 - 6159451
Alignment:
Q  223 gggaaagcaacaaaaacacttggaagattttaaatgataaagtgtggttcataattatgaatgagtcataacatgagtttgcaaagatatagagttgcaa 322  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6159622 gggaaagcaacaaaaacacttggaagattttaaatgata--gtgtggttcataattatgaatgagtcataacatgagtttgcaaagatatagagttgcaa 6159525  T
Q  323 ctttatttagcttcttgacgaccaagtggccttaggggattttcaactcaaccatcatggtaaacgtgtggcga 396  Q
    ||||||| ||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  6159524 ctttattcagcttcttggcgaccaagtggccctagggggtttttaactcaaccatcatggtaaacgtgtggcga 6159451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 6159853 - 6159694
Alignment:
Q  1 gtaaccactacgaccacccggtagctttgaaaacactatattttcaggagtcttattagtgcaattatacactgtctcaagtaatagtataaaaagataa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6159853 gtaaccactacgaccacccgatagctttgaaaacactatattttcaggagtcttattagtgcaattatacactgtttcaagtaatagtataaaaagataa 6159754  T
Q  101 atccacagaaattgagacgatatagttttctgcagctttttagtttgtaaactttttgcg 160  Q
    |  |||||  | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  6159753 actcacagggactgaggcgatatagttttctgcagctttttagtttgtaaactttttgcg 6159694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 405
Target Start/End: Complemental strand, 42438672 - 42438488
Alignment:
Q  223 gggaaagcaacaaaaacacttggaagattttaaatgataaagtgtggttcataattatgaatgagtcataacatgagtttgcaaagatatagag--ttgc 320  Q
    ||||||||||||||| ||||| ||||||   |||||| ||||||||||| | ||  |||||| | | || ||||||| ||||||  ||||||||  ||||    
T  42438672 gggaaagcaacaaaagcacttagaagatcgcaaatgacaaagtgtggttaagaaaaatgaatcatttatgacatgagcttgcaacaatatagagagttgc 42438573  T
Q  321 aactttatttagcttcttgacgaccaagtggccttaggggattttcaactcaaccatcatggtaaacgtgtggcgactgtccttt 405  Q
    || ||||| ||||| |     |||||||||||||| |||| |||  |||||||||||||| |||||||| ||||||||| |||||    
T  42438572 aattttatatagctaccaagagaccaagtggccttgggggttttctaactcaaccatcatagtaaacgtttggcgactgcccttt 42438488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 18609363 - 18609435
Alignment:
Q  333 cttcttgacgaccaagtggccttaggggattttcaactcaaccatcatggtaaacgtgtggcgactgtccttt 405  Q
    ||||||| || ||||||||||||| ||| |||||||||||||||||||||||||  |||| ||||| ||||||    
T  18609363 cttcttggcggccaagtggccttaagggtttttcaactcaaccatcatggtaaatatgtgccgactatccttt 18609435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 42438880 - 42438800
Alignment:
Q  20 ggtagctttgaaaacactat--attttcaggagtcttattagtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||| ||||||||| ||  ||||| | |||||||| |||| ||| |||||| ||||||||||||||||||||||||||    
T  42438880 ggtagctctgaaaacacaatgtatttttaagagtcttactagtacaagtatacattgtctcaagtaatagtataaaaagat 42438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 39039028 - 39038948
Alignment:
Q  75 tctcaagtaatagtataaaaagat-aaatccacagaaattgagacgatatagttttctgcagctttttagtttgtaaactt 154  Q
    ||||||||||||||||||||||||  |||| |||   |||||| || ||||| ||||| |||||||| | |||||||||||    
T  39039028 tctcaagtaatagtataaaaagatcgaatcgacatggattgaggcgttatagctttctacagcttttcaatttgtaaactt 39038948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 2421 - 2479
Alignment:
Q  39 tattttcaggagtcttattagtgcaattatacactgtctcaagtaatagtataaaaaga 97  Q
    |||||||| |||||||| |||||||| | || ||||||| |||||||||||||||||||    
T  2421 tattttcaagagtcttactagtgcaagtgtatactgtcttaagtaatagtataaaaaga 2479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 394
Target Start/End: Original strand, 7394039 - 7394156
Alignment:
Q  279 atgaatgagtcataacatgagtttgcaaagatataga--gttgcaactttatttagcttcttgacgaccaagtggccttaggggattttcaactcaacca 376  Q
    |||||| ||| || ||||| |||||||||||||||||  |||||||||||||  | ||| ||||| || | ||| ||||| | | |||||||| ||| ||    
T  7394039 atgaatcagttatgacatgggtttgcaaagatatagagtgttgcaactttatacaacttattgacaactaggtgtccttacgagtttttcaacacaatca 7394138  T
Q  377 tcatggtaaacgtgtggc 394  Q
    || |||||||||||||||    
T  7394139 tcttggtaaacgtgtggc 7394156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 48053975 - 48054033
Alignment:
Q  40 attttcaggagtcttattagtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||| |||||||| |||| ||| |||||| ||||||||| ||| ||||||||||||    
T  48053975 attttcacgagtcttactagtacaagtatacattgtctcaagcaatggtataaaaagat 48054033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 2995170 - 2995130
Alignment:
Q  58 agtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||| |||| | ||||||||||||||||||||||||||    
T  2995170 agtgcaagtataaaatgtctcaagtaatagtataaaaagat 2995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 7393809 - 7393857
Alignment:
Q  50 gtcttattagtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    |||||| |||||||| ||||||  ||||||||||||| |||||||||||    
T  7393809 gtcttactagtgcaagtatacaacgtctcaagtaataatataaaaagat 7393857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 9120 - 9169
Alignment:
Q  49 agtcttattagtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||||||||||||  ||||||||||||||||  ||||||||||||||    
T  9120 agtcttattagtgcaaacatacactgtctcaagtgttagtataaaaagat 9169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 120555 - 120490
Alignment:
Q  30 aaaacactatattttcaggagtctta-ttagtgcaattatacactgtctcaagtaatagtataaaa 94  Q
    |||||| | ||||||||||||||||| ||||| ||| |||||| ||||| ||||||||||||||||    
T  120555 aaaacattgtattttcaggagtcttacttagtacaagtatacattgtcttaagtaatagtataaaa 120490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 33650192 - 33650249
Alignment:
Q  342 gaccaagtggccttaggggattttcaactcaaccatcatggtaaacgtgtggcgactg 399  Q
    ||||| ||| ||||||||| |||  |||||||||||||||||||| ||||||||||||    
T  33650192 gaccaggtgaccttaggggttttcaaactcaaccatcatggtaaatgtgtggcgactg 33650249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 12121512 - 12121584
Alignment:
Q  28 tgaaaacactat--attttcaggagtcttattagtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||||||||  ||||||| | |||||| ||| | || |||||||| ||||||||||||||||||||||||    
T  12121512 tgaaaacactatgcattttcaagggtcttactagagaaagtatacactatctcaagtaatagtataaaaagat 12121584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 18239268 - 18239176
Alignment:
Q  298 agtttgcaaagatatagagttgcaactttatttagcttcttgacgaccaagtggccttaggggattttcaactcaaccatcatggtaaacgtg 390  Q
    |||| |||| |||| ||||||||||||||||  | |||| ||  ||||||||||||||   ||  |||||||||||| |||||||||||||||    
T  18239268 agttagcaacgatagagagttgcaactttatacaacttcatgctgaccaagtggccttcatggtatttcaactcaacgatcatggtaaacgtg 18239176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 36736328 - 36736388
Alignment:
Q  37 tatattttcaggagtcttattagtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||||||| ||||||| |||||||  |||| | ||| ||||||||||||||||||||||    
T  36736328 tatattttcag-agtcttaatagtgcatgtatatattgtttcaagtaatagtataaaaagat 36736388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 16921280 - 16921331
Alignment:
Q  300 tttgcaaagatataga--gttgcaactttatttagcttcttgacgaccaagt 349  Q
    ||||||||||||||||  |||||||||| || ||||||||||| ||||||||    
T  16921280 tttgcaaagatatagaaagttgcaacttcatatagcttcttgaagaccaagt 16921331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 32280202 - 32280150
Alignment:
Q  39 tattttcaggagtcttattagtgcaattatacactgtctcaagtaatagtata 91  Q
    ||||||||||||| |||  ||||||| ||||||||||||||||||||| ||||    
T  32280202 tattttcaggagttttaccagtgcaagtatacactgtctcaagtaataatata 32280150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 459809 - 459769
Alignment:
Q  58 agtgcaattatacactgtctcaagtaatagtataaaaagat 98  Q
    ||||||| ||||||||||||||||| ||| |||||||||||    
T  459809 agtgcaagtatacactgtctcaagttataatataaaaagat 459769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University