View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18507_high_1 (Length: 720)
Name: NF18507_high_1
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 360 - 703
Target Start/End: Complemental strand, 28896817 - 28896474
Alignment:
| Q |
360 |
cttaaagatgcaactgttgtccaatagcatcaggctttactcacaggttcaccaagacaagaactacaaaatctgctacctatttctagcttaagatccg |
459 |
Q |
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| T |
28896817 |
cttaaagatgcaactcttgtccaatagcatcaggctttactcccaggttcaccaagacaagaactacaaaatctgctacctatttctagcttaagatccg |
28896718 |
T |
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| Q |
460 |
tcctgccccactatagaaccctgcctacctgcaacgccaaaagttgcagcgctagccttgattttaagatcaacacaaggcaaatcttgtcgcgagagac |
559 |
Q |
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| T |
28896717 |
tcccgcccctccatagaaccctgcccacctgcaacgccaaaacttgcagcgctagccttgattttaagatcaacacaaggcaaatcttgtcgcgacagac |
28896618 |
T |
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| Q |
560 |
taaggcaagccattggattcaggcaccattgtgatatgttataatcaaggttattcgatttaatactcaaccaattccaagaggacaagttcgcctcctc |
659 |
Q |
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| T |
28896617 |
taaggcaagccattggattcaggcaccattgtgatatgttataatcaaggttattcgatttaatactcaaccaattccaagaggacaagttcgcctcctc |
28896518 |
T |
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| Q |
660 |
aactatcttatctacacaattttacttactctaaaagagctttc |
703 |
Q |
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| T |
28896517 |
aactatcttatctacacaattttacttactctaaaagagctttc |
28896474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 28896928 - 28896822
Alignment:
| Q |
10 |
aagaatataatgttcaaaccgagaatatatattttgatggcatatgcaggataataacttttttatctctataggtgatagttaaattctctttactatc |
109 |
Q |
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| T |
28896928 |
aagaaaataatgttcaaaccgagaatatatattttgatggcatatgcaggagaataacttttttatctctataggtgatagttaaattctctttattatc |
28896829 |
T |
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| Q |
110 |
ccctaaa |
116 |
Q |
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| T |
28896828 |
ccctaaa |
28896822 |
T |
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