View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18507_high_10 (Length: 249)
Name: NF18507_high_10
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_high_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 37032195 - 37032352
Alignment:
| Q |
92 |
tcaagtcctttacaacaagatctcaacccaacggctatatttccttacctcacttccattattcaatttcattaacaatcatttccctcattaacatttt |
191 |
Q |
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| T |
37032195 |
tcaagtcctttacaacaagatctcaacccaacggctatatttccttacctcacttccattattcaatttcattaacaatcatttccctcattaacatttt |
37032294 |
T |
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| Q |
192 |
ggattcctataacggtccatccatcctcataaaaccatcaaatcatattaacattttt |
249 |
Q |
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| T |
37032295 |
ggattcctataacggtccatccatcctcataaaaccatcaaatcatattaacattttt |
37032352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 37032114 - 37032164
Alignment:
| Q |
11 |
agaaaatccacatgccatgcgttgttgcctagtcaaaatgccaatacagcc |
61 |
Q |
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| T |
37032114 |
agaaaatccacatgccatgccttgttgcctagtcaaaataccaatacagcc |
37032164 |
T |
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