View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18507_high_2 (Length: 460)
Name: NF18507_high_2
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 70 - 443
Target Start/End: Original strand, 6175326 - 6175682
Alignment:
| Q |
70 |
tacactcaattcagggaaataaactataacaatgactacaatagcaacaacccattaacatgaatcaacaaaaaattcaaccacttcaattgaaatcaat |
169 |
Q |
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| T |
6175326 |
tacactcaattcagggaaataaactataacaatgactacaatagcaacaacccattaacatgaatcaacaaaaaattcaaccttttcaattgaaatcaat |
6175425 |
T |
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| Q |
170 |
tactataaaataaataatgaaaaacccaacaagataaatcaccaaaaatatcaattttttatattagaaatcaattactataaacataaacacaaattca |
269 |
Q |
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| T |
6175426 |
tactataaaataaataatgaaaaacccaacaagataaatcaccaaaaatatcagttttttacatt-gagatcaattactataaacataaacacaaattca |
6175524 |
T |
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| Q |
270 |
ggaaggtagattactgatttatgctctaaattgactatgttaagatcgaaattagggttttgagaatttggatagaggaagaaggtttacatgtgttgag |
369 |
Q |
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| T |
6175525 |
ggaaggtagattactgatt----------------taggttaagatcgaaattagggttttgagaatttggatagaggaagaaggtttacctgtgttgag |
6175608 |
T |
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| Q |
370 |
agaggcgagattgaaggcaagagcaacgagatgtaacgacagtgagagtgaattgatgagaagggttttgattg |
443 |
Q |
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| T |
6175609 |
agaggcgagattgaaggcaagagcaacgagatgtaacgacagtgagagtgaattgatgagacgggttttgattg |
6175682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6175257 - 6175291
Alignment:
| Q |
1 |
actacaaaattcaattttgttaattataatcaatt |
35 |
Q |
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| T |
6175257 |
actacaaaattcaattttgttaattaaaatcaatt |
6175291 |
T |
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