View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18507_high_3 (Length: 458)
Name: NF18507_high_3
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 3432595 - 3432164
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432595 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
3432496 |
T |
|
| Q |
101 |
agataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432495 |
agataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagt |
3432396 |
T |
|
| Q |
201 |
tgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432395 |
tgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttgtta |
3432296 |
T |
|
| Q |
301 |
aaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaaggaggacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432295 |
aaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatatgtgtgtgtgtattagtttattttattttgtgaaggaggacc |
3432196 |
T |
|
| Q |
401 |
acactgatatatgtatgcatggtatgtatgtg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3432195 |
acactgatatatgtatgcatggtatgtatgtg |
3432164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 3426425 - 3426073
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| | |
|
|
| T |
3426425 |
gcaagaaggagaaggaagaaaaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatga |
3426326 |
T |
|
| Q |
101 |
agat---aaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagt |
197 |
Q |
| |
|
|||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | ||||||| |
|
|
| T |
3426325 |
agatgataaggtgattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagt |
3426226 |
T |
|
| Q |
198 |
agttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttg |
297 |
Q |
| |
|
||| || ||||||||||||| ||| ||||||||||||||| ||| |||||||| || ||||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
3426225 |
tgtttaagggttggattaacggatttgttggaagatttgggagctgaggatgatgatagcgttgtggttactttggtaccaaggtatgggaaaggaattg |
3426126 |
T |
|
| Q |
298 |
ttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccactt |
350 |
Q |
| |
|
| ||||||||||| || | |||||||||||||| |||||||||| ||||||| |
|
|
| T |
3426125 |
tcaaaatcagaaatatcaagatagagcttgaagattgaaaatttctaccactt |
3426073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 11897869 - 11898230
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| | |
|
|
| T |
11897869 |
gcaaaacggagaaggaagaagaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatga |
11897968 |
T |
|
| Q |
101 |
agat---aaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagt |
197 |
Q |
| |
|
|||| |||| | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | |||||| |
|
|
| T |
11897969 |
agatgctaaggagattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagc |
11898068 |
T |
|
| Q |
198 |
agttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttccaaggtacgggaaaggacttg |
297 |
Q |
| |
|
||| || ||||||||||||| ||| || |||||||||||| ||| |||||||| || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11898069 |
tgtttaagggttggattaacggatttgttgaaagatttgggagctgaggatgatgatagcattgtggttactttggttccaaggtacaggaaaggacttg |
11898168 |
T |
|
| Q |
298 |
ttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
359 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11898169 |
ttaaaatcacaaacattaagatagagcttgaaggttgaaaatttggaccacttgatatatat |
11898230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 179 - 359
Target Start/End: Original strand, 11913093 - 11913272
Alignment:
| Q |
179 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtgttgtggttactttggttcca |
278 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtgttgtggttactttggttcca |
11913192 |
T |
|
| Q |
279 |
aggtacgggaaaggacttgttaaaatcagaaacattatgatagagcttgaaggttgaaaatttgaaccacttgatatatat |
359 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| | || |||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
11913193 |
tggtaagggaaaggacttgttaaaatcacaaacattaaca-agtccttgaaagttgaaaacttggaccacttgatatatat |
11913272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 11912941 - 11913066
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
11912941 |
gcaaaaaggagaaggaagaagaggaagaggtttcagcgattaaagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaatgatga |
11913040 |
T |
|
| Q |
101 |
agataaggtggttaagccatttaatac |
127 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
11913041 |
a-ataaggtggttaagccatttaatac |
11913066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University