View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18507_high_9 (Length: 251)
Name: NF18507_high_9
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_high_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 44033069 - 44032834
Alignment:
| Q |
13 |
aatattgaagctagctaaggatgtagctacgtttgctacaacatgggcattcgtatggagttgtttctattatggtgtcggattttgtatttgaaaaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44033069 |
aatattgaagctagctaaggatgtagctacgtttgctacaacatgggcattcgtattgagttgtttctattatggtgtcggattttgtatttgaaaaatt |
44032970 |
T |
|
| Q |
113 |
agaatttattaatataagtaatactccctctgttctttttatataagagaaagttagatcaactaaagttgatatatcttatttaaaattgagactaaat |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44032969 |
agaatttattaatataagtaatattccctctattc---taatataagagaaagttagatcaaccaaagttgatatatcttatttaaaattgagactaaat |
44032873 |
T |
|
| Q |
213 |
acatcaannnnnnnatgatccaattttcttttacatgct |
251 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| |
|
|
| T |
44032872 |
aaatcaatttttttatgatccaattttcttttacatgct |
44032834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 31748443 - 31748383
Alignment:
| Q |
152 |
tatataagagaaagttagatcaactaaagttgatatatcttatttaaaattgagactaaata |
213 |
Q |
| |
|
||||||||| |||||| || ||| |||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
31748443 |
tatataagataaagtttaat-aacaaaagttgatatatcttgtttaaaatttagactaaata |
31748383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University