View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18507_low_1 (Length: 1078)
Name: NF18507_low_1
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 868; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 868; E-Value: 0
Query Start/End: Original strand, 6 - 946
Target Start/End: Original strand, 43050960 - 43051913
Alignment:
| Q |
6 |
atgtcgaataatattcagatatatctagtatgacgaatgaccaaaaatatatatcttagcaaaaatagatttctttcaagtatgcaagagttagaaagaa |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43050960 |
atgttgaataatattcagatatatctagtatgacgaatgaccaaaaatatacatcttagcaaaaatagatttctttcaagtatgcaagagttagaaagaa |
43051059 |
T |
|
| Q |
106 |
tggtgca-------catcattcttcattttaggtaacaagcaaaatacatatatttttct-ttattattgagtaatagtcatgttgatgatctataatct |
197 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051060 |
tggtgaatggtgcgcatcattcttcattttaggtaacaagcaaaatacacatatttttttattattattgagtaatagtcatgttgatgatctataatct |
43051159 |
T |
|
| Q |
198 |
atttcgggagagagataagaataggaatagtaaatagagagagtagttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatgg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051160 |
atttcgggagagagataagaataggaatagtaaatagagagagtagttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatgg |
43051259 |
T |
|
| Q |
298 |
aggtaaagcgtgcatcatcactcacccatcatccaattccattccaacccttatttaaaaacaatatttgaaggtcacaatca-----cattacattaca |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43051260 |
aggtaaagcgtgcatcatcactcacccatcatccaattccattccaacccttatttaaaaacaatatttgaaggtcacaatcatattacattacattaca |
43051359 |
T |
|
| Q |
393 |
acaacactaaacaacaagaagaaaaaaggaacaaattttgaaggacaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggc |
492 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051360 |
acaacactacacaacaagaagaaaaaaggaacaaattttgaaggacaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggc |
43051459 |
T |
|
| Q |
493 |
accggacatcacctatctgccgctgccatcattggccatgatggctctgtttgggctcagagctcttccttccctcaggtatattcatcattacattccc |
592 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051460 |
accggacaccacctatctgccgctgccatcattggccatgatggctctgtttgggctcagagctcttccttccctcaggtatattcatcattacattccc |
43051559 |
T |
|
| Q |
593 |
acatgaaactattcttggtcattcattgcgtatttgaagattagattttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatc |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051560 |
acatgaaactattcttggtcattcattgcgtatttgaagattagattttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatc |
43051659 |
T |
|
| Q |
693 |
aatttttatttatgattatttttcagattaagcctcaagagaacactgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgca |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051660 |
aatttttatttatgattatttttcagattaagcctcaagagaacactgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgca |
43051759 |
T |
|
| Q |
793 |
ccttgcaggagtcaaatacatggtcatccaaggagagtctggtgctgtcatccgtgggaagaaggtaaattattcaatttcgcacacaaatttctagtat |
892 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051760 |
ccttgcaggagtcaaatacatggtcatccaaggagagtctggtgctgtcatccgtgggaagaaggtaaattattcaatttcgcacacaaatttctagtat |
43051859 |
T |
|
| Q |
893 |
tcatattattgaggttgtatttaagtctcatgttgtcaatattttcgagttgtt |
946 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43051860 |
tcatattattgaggttgtatttaagtctcatgttgccaatattttcgagttgtt |
43051913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 964 - 1063
Target Start/End: Original strand, 43051903 - 43052002
Alignment:
| Q |
964 |
ttcgagttgtttcagaatgatattcaagtccatttaacatggtatcaaaaccgtgttaagtacacgttgtgtattaaagacaaaaatgatatgtgtgatt |
1063 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051903 |
ttcgagttgtttcagaatgatattcaagaccatttaacatggtatcaaaaccgtgttaagtacacgttgtgtattaaagacaaaaatgatatgtgtgatt |
43052002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 437 - 573
Target Start/End: Complemental strand, 34173974 - 34173838
Alignment:
| Q |
437 |
acaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgccatcattggccatgatgg |
536 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || |||||||| | || |||||||| | |||||||| || |
|
|
| T |
34173974 |
acaaaatgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggtcatcacctcaccgcggctgccattctcggccatgacgg |
34173875 |
T |
|
| Q |
537 |
ctctgtttgggctcagagctcttccttccctcaggta |
573 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |
|
|
| T |
34173874 |
ttctgtttgggctcagagcacttcattccctcaggta |
34173838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 711 - 860
Target Start/End: Complemental strand, 34173209 - 34173060
Alignment:
| Q |
711 |
tttttcagattaagcctcaagagaacactgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaata |
810 |
Q |
| |
|
|||| ||| |||||||| | |||| |||| ||| ||||||||||| |||||||| || |||||||| ||||| ||| ||||||||| | | |||| || |
|
|
| T |
34173209 |
ttttacagtttaagcctgatgagattactggtatcatgaaagatttcgacgaaccaggacatcttgcacctactggcatgcaccttggggaaatcaagta |
34173110 |
T |
|
| Q |
811 |
catggtcatccaaggagagtctggtgctgtcatccgtgggaagaaggtaa |
860 |
Q |
| |
|
|||||| || ||||||||| |||| |||||||| |||||||||||||||| |
|
|
| T |
34173109 |
catggttattcaaggagagcctggagctgtcattcgtgggaagaaggtaa |
34173060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University