View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18507_low_10 (Length: 334)

Name: NF18507_low_10
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18507_low_10
NF18507_low_10
[»] chr7 (1 HSPs)
chr7 (31-334)||(37032510-37032813)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 37032813 - 37032510
Alignment:
Q  31 aattgtatagattaattcgtcgaggtaatttagatttatttaacggtaagttttatgaaaatgtgtaaaacaaaagactaagaaaaaatgttaattgggg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032813 aattgtatagattaattcgtcgaggtaatttagatttatttaacggtaagttttatgaaaatgtgtaaaacaaaagactaagaaaaaatgttaattgggg 37032714  T
Q  131 tctcaccttgtgaatggttcccaagagtgatgacttgtttctgttatctctaaccctgagctgccggagcacagacttccggctcactgttgccggcaaa 230  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032713 tttcaccttgtgaatggttcccaagagtgatgacttgtttctgttatctctaaccctgagctgccggagcacagacttccggctcactgttgccggcaaa 37032614  T
Q  231 agcgacctcctttccacgacggctgtgctgccgtttgaagagctctcagattgattttccttcatctttttgcggcgtttgataagacgtaactctttct 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032613 agcgacctcctttccacgacggctgtgctgccgtttgaagagctctcagattgattttccttcatctttttgcggcgtttgataagacgtaactctttct 37032514  T
Q  331 tctc 334  Q
    ||||    
T  37032513 tctc 37032510  T

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