View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18507_low_11 (Length: 327)
Name: NF18507_low_11
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 2433218 - 2433516
Alignment:
| Q |
13 |
aatattatttttctcttcataagatctcactcacttggtacaggatatcatttttgctggaagtgaaacaacatcttcaactttagaatgggctttttca |
112 |
Q |
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| T |
2433218 |
aatattatttttctcttcaaaagatctcactcacttggtacaggatatcatttttgctggaagtgaaacaacatcttcaactttagaatgggctttttca |
2433317 |
T |
|
| Q |
113 |
gaaatgatgaaaaaccctagagtgctaaaaaaggctcaagcagaagttagacaagtctttggaaacaaaggatatattgatgaaataaatcttcaagaac |
212 |
Q |
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| T |
2433318 |
gaaatgatgaaaaaccctagagtgctaaaaaaggctcaagcagaagttagacaagtctttggaaacaaaggatatattgatgaaataaattttcaagaac |
2433417 |
T |
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| Q |
213 |
tgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatg |
311 |
Q |
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| T |
2433418 |
tgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatg |
2433516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 53 - 302
Target Start/End: Complemental strand, 12438728 - 12438479
Alignment:
| Q |
53 |
caggatatcatttttgctggaagtgaaacaacatcttcaactttagaatgggctttttcagaaatgatgaaaaaccctagagtgctaaaaaaggctcaag |
152 |
Q |
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| T |
12438728 |
caggatatattttttgctggaagtgggacatcagctacaactttagaatgggccttttcagaaatgttgaaaaatccaagagtattaaaaaaggctcaag |
12438629 |
T |
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| Q |
153 |
cagaagttagacaagtctttggaaacaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagatt |
252 |
Q |
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| T |
12438628 |
cagaagttaggcatgttgttggaagcaagggatatgttgatgaaataaatcttcaagaactaaaatatttaaaagcagtgattaaagaaaccttaagatt |
12438529 |
T |
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| Q |
253 |
gcacccacctagtcctctactactaccaagagagtgtattgaaacttgtg |
302 |
Q |
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| T |
12438528 |
gcaccctcctggtcctctactaattccaagagagtgtattgaaaattgtg |
12438479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 311
Target Start/End: Original strand, 41654343 - 41654581
Alignment:
| Q |
70 |
tggaagtgaaacaacatcttcaactttagaatgggctttttcagaaatgatgaaaaaccctagagtgctaaaaaaggctcaagcagaagttagacaagtc |
169 |
Q |
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| T |
41654343 |
tggaagtgagacatcatccttaactatacaatgggctttctcagaaatgctgaaaaaccctagagtaatgaaaaaggctcaagaagaagttagacaagct |
41654442 |
T |
|
| Q |
170 |
tttggaaacaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctc |
269 |
Q |
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| T |
41654443 |
tttggtagcagaggatatgttgatgaaaaagatcttcaagaactgaaatatctaaaagcagttattaaagaaacattaagagtgcatcctcctaatcctg |
41654542 |
T |
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| Q |
270 |
tactactaccaagagagtgtattgaaacttgtgagattaatg |
311 |
Q |
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| || | || |||||||||||||||||||||||||| |||| |
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| T |
41654543 |
t-ct--ttcctagagagtgtattgaaacttgtgagataaatg |
41654581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 311
Target Start/End: Original strand, 41646837 - 41647046
Alignment:
| Q |
99 |
aatgggctttttcagaaatgatgaaaaaccctagagtgctaaaaaaggctcaagcagaagttagacaagtctttggaaacaaaggatatattgatgaaat |
198 |
Q |
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|||||||||| ||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||| ||||| | || ||||||| ||||||||| |
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| T |
41646837 |
aatgggctttctcagaaatgctgaaaaaccctagagtaatgaaaaaggctcaagaagaagttagacaagcttttggtagcagaggatatgttgatgaaaa |
41646936 |
T |
|
| Q |
199 |
aaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaact |
298 |
Q |
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| T |
41646937 |
agatcttcaaaaactgaaatttctaaaagcagttattaaagaaaccttaagattgcacccttctaatcctat-ct--ttcctagagagtgtattgaaact |
41647033 |
T |
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| Q |
299 |
tgtgagattaatg |
311 |
Q |
| |
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|||||||| |||| |
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| T |
41647034 |
tgtgagataaatg |
41647046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 41621197 - 41620942
Alignment:
| Q |
53 |
caggatatcatttttgctggaagtgaaacaacatcttcaactttagaatgggctttttcagaaatgatgaaaaaccctagagtgctaaaaaaggctcaag |
152 |
Q |
| |
|
|||||||| ||| ||| ||||||||| || || || ||||| | |||||||| || ||||||||| |||||||||||||| | | |||| |||||||| |
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| T |
41621197 |
caggatattattattggtggaagtgagccatcaactacaactatggaatgggccttctcagaaatgctgaaaaaccctagaatattgaaaagggctcaag |
41621098 |
T |
|
| Q |
153 |
cagaagttagacaagtctttggaaacaaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagatt |
252 |
Q |
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|||||||||||| | |||| | || ||||||| ||||||||| | ||||| |||||||||||| | |||||||| | |||||||||||||| ||| | |
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| T |
41621097 |
aagaagttagacatgcttttgttagcagaggatatgttgatgaaaaagatcttgaagaactgaaatttctaaaagcagttattaaagaaaccttcagact |
41620998 |
T |
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| Q |
253 |
gcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatg |
311 |
Q |
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||| || |||| |||| |||| || |||||||||| ||||||||||||||| |||| |
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| T |
41620997 |
gcatcctcctaatcctttacttct---aagagagtgtgctgaaacttgtgagataaatg |
41620942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 309
Target Start/End: Original strand, 41465642 - 41465773
Alignment:
| Q |
178 |
caaaggatatattgatgaaataaatcttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcacccacctagtcctctactacta |
277 |
Q |
| |
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||||||||| |||||||||| | |||||||| |||||||||| | |||||| | || |||||||| ||||||||||||| ||| ||||| || || |
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| T |
41465642 |
caaaggatacattgatgaaacatctcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccctcctttccctcttcttctc |
41465741 |
T |
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| Q |
278 |
ccaagagagtgtattgaaacttgtgagattaa |
309 |
Q |
| |
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| T |
41465742 |
cctagagaatgcagagaaacttgtgagattaa |
41465773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 5022493 - 5022259
Alignment:
| Q |
26 |
tcttcataagatctcactcacttggtacaggatatcatttttgctggaagtgaaacaacatcttcaactttagaatgggc----tttttcagaaatgatg |
121 |
Q |
| |
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||||||| |||||||||| | |||| |||||||| || ||| ||||||||| ||| ||||| ||||||| |||||||| ||| |||||| || || |
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| T |
5022493 |
tcttcatgagatctcactatcatggtgcaggatatgcttattggtggaagtgagacatcatctacaactttggaatgggcgggctttctcagaattgctg |
5022394 |
T |
|
| Q |
122 |
aaaaaccctagagtgctaaaaaaggctcaagcagaagttagacaagtctttggaaacaaaggatatattgatgaaataaatcttcaagaactgaaatatg |
221 |
Q |
| |
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| |||||| ||||| || | | |||||||| |||||||||||| || ||| | | ||||||| |||||||| | ||||||||||| |||||| | |
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| T |
5022393 |
agaaacccaagagtactgattagggctcaagaagaagttagacaggtttttagtggaacaggatatgttgatgaagtggatcttcaagaattgaaatttc |
5022294 |
T |
|
| Q |
222 |
taaaagcaataattaaagaaaccttaagattgcac |
256 |
Q |
| |
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|||||| | | |||||||||||||||||| ||||| |
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|
| T |
5022293 |
taaaagaagtgattaaagaaaccttaagaatgcac |
5022259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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