View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18507_low_22 (Length: 205)

Name: NF18507_low_22
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18507_low_22
NF18507_low_22
[»] chr3 (27 HSPs)
chr3 (1-59)||(32720333-32720391)
chr3 (1-59)||(35352192-35352250)
chr3 (1-59)||(37567565-37567623)
chr3 (1-59)||(51235868-51235926)
chr3 (1-59)||(52782161-52782219)
chr3 (1-59)||(36019418-36019476)
chr3 (1-59)||(49950926-49950984)
chr3 (2-59)||(14460532-14460589)
chr3 (1-58)||(48388762-48388819)
chr3 (3-59)||(35320362-35320418)
chr3 (1-59)||(33830877-33830935)
chr3 (1-59)||(44962951-44963009)
chr3 (1-58)||(50560364-50560421)
chr3 (1-58)||(53186351-53186408)
chr3 (3-59)||(26409632-26409688)
chr3 (11-59)||(45927577-45927625)
chr3 (3-59)||(50465821-50465877)
chr3 (1-59)||(9322431-9322489)
chr3 (5-55)||(44500141-44500191)
chr3 (1-55)||(48925417-48925471)
chr3 (1-59)||(53376938-53376995)
chr3 (1-55)||(55365380-55365434)
chr3 (15-59)||(2667986-2668030)
chr3 (1-56)||(48990641-48990696)
chr3 (1-59)||(347037-347095)
chr3 (3-59)||(882073-882129)
chr3 (3-59)||(7157040-7157096)
[»] chr1 (36 HSPs)
chr1 (1-59)||(3150187-3150245)
chr1 (1-59)||(10061504-10061562)
chr1 (1-59)||(31570973-31571031)
chr1 (1-59)||(41321352-41321410)
chr1 (5-59)||(47860757-47860811)
chr1 (3-59)||(14131354-14131410)
chr1 (1-59)||(2684315-2684373)
chr1 (1-59)||(7426662-7426720)
chr1 (1-59)||(9259818-9259876)
chr1 (1-55)||(10635251-10635305)
chr1 (1-59)||(39853306-39853364)
chr1 (1-59)||(40850368-40850426)
chr1 (1-59)||(44647247-44647305)
chr1 (1-55)||(49289235-49289289)
chr1 (1-58)||(27038890-27038947)
chr1 (3-59)||(9222856-9222912)
chr1 (3-59)||(29171514-29171570)
chr1 (3-59)||(50502346-50502402)
chr1 (1-59)||(33828866-33828924)
chr1 (1-59)||(33839042-33839100)
chr1 (1-59)||(37765255-37765313)
chr1 (1-59)||(43224647-43224705)
chr1 (1-59)||(48868064-48868122)
chr1 (1-59)||(52079779-52079837)
chr1 (1-59)||(52273721-52273779)
chr1 (3-59)||(48481198-48481254)
chr1 (1-48)||(27802159-27802206)
chr1 (5-59)||(5057550-5057604)
chr1 (1-59)||(14191241-14191299)
chr1 (1-55)||(17376702-17376756)
chr1 (3-59)||(1658551-1658607)
chr1 (3-59)||(31015890-31015946)
chr1 (4-59)||(20280571-20280626)
chr1 (4-59)||(28094780-28094835)
chr1 (4-59)||(41550149-41550204)
chr1 (1-59)||(8085992-8086050)
[»] scaffold0493 (1 HSPs)
scaffold0493 (1-59)||(1734-1792)
[»] chr8 (20 HSPs)
chr8 (1-59)||(35037810-35037868)
chr8 (1-59)||(36835689-36835747)
chr8 (1-59)||(7223830-7223888)
chr8 (1-59)||(28896907-28896965)
chr8 (1-59)||(38627334-38627392)
chr8 (1-59)||(38971811-38971869)
chr8 (1-59)||(39002909-39002967)
chr8 (1-59)||(43182726-43182784)
chr8 (1-59)||(196068-196126)
chr8 (1-59)||(310905-310963)
chr8 (1-59)||(464597-464655)
chr8 (1-59)||(14913846-14913904)
chr8 (3-59)||(12266073-12266129)
chr8 (1-59)||(37766304-37766362)
chr8 (5-59)||(21835781-21835836)
chr8 (1-48)||(45401495-45401542)
chr8 (1-55)||(1426333-1426387)
chr8 (1-49)||(45393458-45393506)
chr8 (4-59)||(3053149-3053204)
chr8 (3-59)||(18844161-18844217)
[»] chr7 (21 HSPs)
chr7 (1-59)||(3062240-3062298)
chr7 (1-59)||(9915505-9915563)
chr7 (1-59)||(9923417-9923475)
chr7 (1-59)||(25867252-25867310)
chr7 (1-59)||(42039649-42039707)
chr7 (1-59)||(45196806-45196864)
chr7 (4-59)||(1282535-1282590)
chr7 (1-48)||(32186436-32186483)
chr7 (1-59)||(24505470-24505528)
chr7 (1-55)||(41715145-41715199)
chr7 (1-58)||(42902389-42902446)
chr7 (3-59)||(17335086-17335142)
chr7 (1-49)||(47220302-47220350)
chr7 (3-55)||(47068968-47069020)
chr7 (4-59)||(7574116-7574171)
chr7 (5-59)||(18922927-18922981)
chr7 (1-59)||(39444312-39444370)
chr7 (1-42)||(40946992-40947033)
chr7 (3-59)||(15091017-15091072)
chr7 (3-55)||(27426778-27426830)
chr7 (3-59)||(2038097-2038153)
[»] chr5 (26 HSPs)
chr5 (1-59)||(10453627-10453685)
chr5 (1-59)||(16730070-16730128)
chr5 (1-57)||(32063529-32063585)
chr5 (1-59)||(3882178-3882236)
chr5 (1-59)||(25684410-25684468)
chr5 (1-55)||(31236594-31236648)
chr5 (1-59)||(43411519-43411577)
chr5 (1-54)||(22798074-22798127)
chr5 (1-57)||(8068323-8068379)
chr5 (3-59)||(28769948-28770004)
chr5 (5-59)||(4095009-4095063)
chr5 (1-59)||(23189069-23189127)
chr5 (1-59)||(42534395-42534453)
chr5 (3-59)||(2148129-2148185)
chr5 (3-59)||(22279219-22279275)
chr5 (5-59)||(9530713-9530767)
chr5 (1-59)||(15726272-15726330)
chr5 (1-47)||(37313853-37313899)
chr5 (1-59)||(39540721-39540779)
chr5 (1-59)||(40340775-40340833)
chr5 (1-59)||(41631565-41631623)
chr5 (3-59)||(13588866-13588922)
chr5 (3-59)||(19126261-19126317)
chr5 (4-59)||(32624526-32624581)
chr5 (1-59)||(10688740-10688798)
chr5 (3-58)||(37962997-37963052)
[»] chr4 (20 HSPs)
chr4 (1-59)||(2526518-2526576)
chr4 (1-59)||(10778993-10779051)
chr4 (1-59)||(44998757-44998815)
chr4 (1-58)||(46630648-46630705)
chr4 (1-59)||(24292325-24292383)
chr4 (1-59)||(36569995-36570053)
chr4 (1-59)||(38955044-38955102)
chr4 (1-59)||(42244539-42244597)
chr4 (1-59)||(16004535-16004593)
chr4 (1-59)||(21515336-21515394)
chr4 (5-59)||(27967861-27967915)
chr4 (3-59)||(33612872-33612928)
chr4 (1-48)||(48549677-48549724)
chr4 (1-59)||(52257479-52257537)
chr4 (1-46)||(46633638-46633683)
chr4 (1-49)||(46222004-46222052)
chr4 (3-59)||(54499923-54499979)
chr4 (1-58)||(45629456-45629513)
chr4 (2-55)||(56017134-56017187)
chr4 (3-58)||(27636089-27636144)
[»] chr2 (25 HSPs)
chr2 (1-59)||(28394415-28394473)
chr2 (1-59)||(37725898-37725956)
chr2 (1-59)||(2316840-2316898)
chr2 (1-59)||(3723943-3724001)
chr2 (1-59)||(16814853-16814911)
chr2 (1-59)||(16854133-16854191)
chr2 (1-59)||(18576302-18576360)
chr2 (1-59)||(21836632-21836690)
chr2 (1-55)||(36947488-36947542)
chr2 (1-59)||(40533598-40533656)
chr2 (1-58)||(45555729-45555786)
chr2 (3-59)||(18008957-18009013)
chr2 (1-59)||(5084841-5084899)
chr2 (1-59)||(10711623-10711681)
chr2 (1-59)||(13568214-13568272)
chr2 (1-59)||(19635982-19636040)
chr2 (1-59)||(19834575-19834633)
chr2 (1-59)||(35292858-35292916)
chr2 (3-59)||(7504024-7504080)
chr2 (3-59)||(36049466-36049522)
chr2 (3-59)||(6657794-6657850)
chr2 (3-59)||(44068361-44068417)
chr2 (3-59)||(1860276-1860332)
chr2 (1-49)||(33423744-33423792)
chr2 (3-59)||(39878921-39878977)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-58)||(291970-292027)
[»] chr6 (10 HSPs)
chr6 (3-59)||(34969781-34969837)
chr6 (1-59)||(29638736-29638794)
chr6 (1-59)||(35224831-35224889)
chr6 (3-59)||(34315126-34315182)
chr6 (1-59)||(1339201-1339259)
chr6 (1-59)||(18871270-18871328)
chr6 (1-59)||(32518749-32518807)
chr6 (1-59)||(33954799-33954857)
chr6 (3-59)||(24025783-24025839)
chr6 (1-44)||(6015821-6015864)
[»] scaffold0239 (1 HSPs)
scaffold0239 (1-59)||(15728-15786)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-59)||(166421-166479)
[»] scaffold0121 (1 HSPs)
scaffold0121 (3-59)||(13952-14008)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-44)||(17514-17557)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32720333 - 32720391
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32720333 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccatagaagttc 32720391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35352250 - 35352192
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  35352250 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 35352192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37567565 - 37567623
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  37567565 atattttgtgaaacaagagtaccgatacactcaaaattatgagtgtaccatagaagttc 37567623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51235868 - 51235926
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  51235868 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 51235926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52782219 - 52782161
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  52782219 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 52782161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36019476 - 36019418
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  36019476 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 36019418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 49950984 - 49950926
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  49950984 atattttgtgaaataagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 49950926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 14460532 - 14460589
Alignment:
Q  2 tattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  14460532 tattttgtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttc 14460589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48388819 - 48388762
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  48388819 atattttgtgaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaagtt 48388762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 35320418 - 35320362
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  35320418 attttgtaaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 35320362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33830877 - 33830935
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||| |||||||||    
T  33830877 atattttatgaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaagttc 33830935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44962951 - 44963009
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  44962951 atattttgtaaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 44963009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50560421 - 50560364
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  50560421 atattttgtgaaacaagagtcccgatacacttaaaattgtgactgtaccatagaagtt 50560364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 53186351 - 53186408
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||    
T  53186351 atattttgtgaaacaagagtaccagcacactcaaaattgtgagtgtaccatagaagtt 53186408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 26409688 - 26409632
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||    
T  26409688 attttgtgaaacaagagtaccggtacactaaaatttctgagtgtaccgtagaagttc 26409632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 45927577 - 45927625
Alignment:
Q  11 aaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  45927577 aaacaagagtaccgatacactcaaaattatgagtgtaccatagaagttc 45927625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 50465821 - 50465877
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  50465821 attttgtaaaacaagaataccggtacactcaaaattgtgagtgtaccatagaagttc 50465877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9322489 - 9322431
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||  | |||||||||||||||| ||||| |||||||||    
T  9322489 atattttgtgaaacaagagtaccagtccactcaaaattgtgagggtaccatagaagttc 9322431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 44500191 - 44500141
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  44500191 tttgtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaa 44500141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48925471 - 48925417
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||| |||||    
T  48925471 atattttatgaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaa 48925417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53376938 - 53376995
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||||| |||||||||    
T  53376938 atattttgtgaa-caagagtaccggtacattcaaaattgtgagtgtaccatagaagttc 53376995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 55365434 - 55365380
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||| |||||    
T  55365434 atattttgtgaaacaagagtaccagtacattcaaaattgtgagtgtaccatagaa 55365380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 2667986 - 2668030
Alignment:
Q  15 aagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  2667986 aagagtaccggtacactcaaaattgcgagtgtaccgtagaagttc 2668030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48990641 - 48990696
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaag 56  Q
    ||||||| | |||||||||||||| | |||||||||||||||||||||| ||||||    
T  48990641 atattttataaaacaagagtaccggtgcactcaaaattgtgagtgtaccatagaag 48990696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 347037 - 347095
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||  | ||||  ||||||||||||| |||||||||| |||||||||    
T  347037 atattttgtgaaacagaaataccagtacactcaaaattatgagtgtaccatagaagttc 347095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 882073 - 882129
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||| |||| || |||||| ||| ||  |||||||||||||||||||    
T  882073 attttgtgaaacaaaagtatcggtacactaaaatttccgagtgtaccgtagaagttc 882129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 7157096 - 7157040
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| ||||||||||||| ||  || ||| |||||||||    
T  7157096 attttgtgcaacaagagtaccggtacactcaaaattatggatgcaccatagaagttc 7157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3150245 - 3150187
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3150245 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccatagaagttc 3150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10061504 - 10061562
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  10061504 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 10061562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31571031 - 31570973
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  31571031 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 31570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41321352 - 41321410
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  41321352 atattttgtgaaacaagagtaccaatacactcaaaattgtgagtgtaccatagaagttc 41321410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 47860811 - 47860757
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47860811 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccatagaagttc 47860757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 14131410 - 14131354
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14131410 attttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 14131354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2684315 - 2684373
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  2684315 atattttgtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttc 2684373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7426720 - 7426662
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  7426720 atattttgtgaaagaagagtaccggtacactcaaaattatgagtgtaccgtagaagttc 7426662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9259876 - 9259818
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  9259876 atattttgtgaaacaagagtaccggtacattcaaaattgtgagtgtaccatagaagttc 9259818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10635305 - 10635251
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  10635305 atattttgtgaaacaagagtaccgacacactcaaaattgtgagtgtaccatagaa 10635251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39853306 - 39853364
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  39853306 atattttgtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttc 39853364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40850368 - 40850426
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  40850368 atattttgtgaaacaagaataccggtacactcaaaattgtgagtgtaccatagaagttc 40850426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44647305 - 44647247
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  44647305 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtctaccatagaagttc 44647247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49289289 - 49289235
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  49289289 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaa 49289235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27038890 - 27038947
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  27038890 atattttgtgaaagaagagtaccggtacactcaaaattgtgagtgtaccatagaagtt 27038947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 9222912 - 9222856
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9222912 attttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 9222856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 29171514 - 29171570
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  29171514 attttgtgaaacaagagtaccggtacactcaaaattgtgagtgtacgatagaagttc 29171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 50502402 - 50502346
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  50502402 attttgtgaaacaagagtaccggtacactcaaaattgtgaatgtaccatagaagttc 50502346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33828924 - 33828866
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  33828924 atattttgtaaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 33828866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33839042 - 33839100
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  33839042 atattttgtaaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 33839100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37765313 - 37765255
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||    
T  37765313 atattttgtaaaacaagagtaccggtacactcaaaattgtgagtgtaccataaaagttc 37765255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43224705 - 43224647
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  43224705 atattttttgaaaaaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 43224647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48868122 - 48868064
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||| | |||||||||    
T  48868122 atattttgtaaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttc 48868064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52079779 - 52079837
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||    
T  52079779 atattttgtgaaacaagagtaccggtacactcaaaattatgagtgtatcatagaagttc 52079837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52273779 - 52273721
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||    
T  52273779 atattttgtgaaacaaaagtaacggtacactcaaaattgtgagtgtaccatagaagttc 52273721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 48481198 - 48481254
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  48481198 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttc 48481254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27802159 - 27802206
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtac 48  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  27802159 atattttgtgaaacaagagtaccggtacattcaaaattgtgagtgtac 27802206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 5057550 - 5057604
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  5057550 tttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttc 5057604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14191241 - 14191299
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||  |||||||||    
T  14191241 atattttgtgaaacaagagtacgggtacactcaaaattatgagtgtactatagaagttc 14191299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 17376702 - 17376756
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||| |||||    
T  17376702 atattttgtgaaacaagagtactggtacactcaaaattgtaagtgtaccatagaa 17376756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 1658607 - 1658551
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||| ||||| |||||||||||||||| ||||||| |||||||||    
T  1658607 attttgtgcaacaagaataccggtacactcaaaattgtgggtgtaccatagaagttc 1658551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 31015946 - 31015890
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||| ||||||||||||| || |||||| ||||||||||||||||| |||||||||    
T  31015946 attttatgaaacaagagtatcggtacacttaaaattgtgagtgtaccatagaagttc 31015890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 20280571 - 20280626
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||| |||||| ||| || | ||||||||||||||||||    
T  20280571 ttttgtgaaacaagagtaccggtacactaaaatttcttagtgtaccgtagaagttc 20280626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 28094835 - 28094780
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||| | |||||||||||| ||| || ||||||||||||||||||||    
T  28094835 ttttgtgaaacaaaaataccgatacactaaaatttttgagtgtaccgtagaagttc 28094780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 41550204 - 41550149
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||| |||||| ||| || |||||||||| |||||||||    
T  41550204 ttttgtgaaacaagagtaccggtacactaaaatttctgagtgtaccatagaagttc 41550149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8085992 - 8086050
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| ||||||| || | |||||||| |||||||||| |||||||||    
T  8085992 atattttgtgaaacaaaagtaccggtaaattcaaaattatgagtgtaccatagaagttc 8086050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1734 - 1792
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  1734 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 1792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35037810 - 35037868
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  35037810 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 35037868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36835689 - 36835747
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  36835689 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 36835747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7223830 - 7223888
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  7223830 atattttgtaaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 7223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28896965 - 28896907
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  28896965 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 28896907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38627334 - 38627392
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  38627334 atattttgtgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 38627392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38971811 - 38971869
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  38971811 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtactatagaagttc 38971869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39002909 - 39002967
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  39002909 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtactatagaagttc 39002967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43182784 - 43182726
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  43182784 atattttgtgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 43182726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 196126 - 196068
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  196126 atattatgtgaaacaagagtaccggcacactcaaaattgtgagtgtaccatagaagttc 196068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 310963 - 310905
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  310963 atattatgtgaaacaagagtaccggcacactcaaaattgtgagtgtaccatagaagttc 310905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 464597 - 464655
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||    
T  464597 atattttgtgaaacaagaataccggtacactcaaaattgtgaatgtaccatagaagttc 464655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14913904 - 14913846
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||    
T  14913904 atattttgtaaaacaagagtaccggtacactcaaaattgtgagtgtgccatagaagttc 14913846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 12266129 - 12266073
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  12266129 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttc 12266073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37766362 - 37766304
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||  |||| |||||||||||| |||||| |||||||||    
T  37766362 atattttgtgaaacaagagtaccagtacattcaaaattgtgaatgtaccatagaagttc 37766304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 21835781 - 21835836
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactc-aaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  21835781 tttgtgaaacaagagtactggtacactcaaaaattgtgagtgtaccatagaagttc 21835836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45401495 - 45401542
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtac 48  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||    
T  45401495 atattttgtgaaacaagagtagcggtacattcaaaattgtgagtgtac 45401542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1426387 - 1426333
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    ||||||||  |||||||||||||  |||||||||||||||||||||||| |||||    
T  1426387 atattttgcaaaacaagagtaccagtacactcaaaattgtgagtgtaccatagaa 1426333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45393506 - 45393458
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtacc 49  Q
    ||||||| |||||||||||||||  |||| |||||||||||||||||||    
T  45393506 atattttatgaaacaagagtaccagtacattcaaaattgtgagtgtacc 45393458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 3053149 - 3053204
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||| || |||||| ||| || ||||| ||||||||||||||    
T  3053149 ttttgtgaaacaagagtatcggtacactaaaatttctgagtataccgtagaagttc 3053204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 18844217 - 18844161
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||| |  || ||| ||| |||| ||||||||||||||||||    
T  18844217 attttgtgaaacaagagtatcagtatactaaaatttgtaagtgtaccgtagaagttc 18844161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3062240 - 3062298
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  3062240 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 3062298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9915505 - 9915563
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9915505 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 9915563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9923417 - 9923475
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  9923417 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 9923475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 25867252 - 25867310
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  25867252 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 25867310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42039649 - 42039707
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  42039649 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 42039707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45196864 - 45196806
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  45196864 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 45196806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 1282535 - 1282590
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  1282535 ttttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 1282590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32186483 - 32186436
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtac 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  32186483 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtac 32186436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24505470 - 24505528
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  24505470 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccataaaagttc 24505528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41715199 - 41715145
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||    
T  41715199 atattttgtgaaacaagagtatcggtacactcaaaattgtgagtgtactgtagaa 41715145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42902446 - 42902389
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||    
T  42902446 atattttgtgaaataagagtaccggtacacttaaaattgtgagtgtaccgtataagtt 42902389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 17335086 - 17335142
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  17335086 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccgttgaagttc 17335142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47220302 - 47220350
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtacc 49  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  47220302 atattttgtgaaacaagagtaccggtacactcaaaattgtaagtgtacc 47220350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 47069020 - 47068968
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||||||| |||||| || |||||||||||||| |||||    
T  47069020 attttgtgaaacaagagtaccggtacacttaagattgtgagtgtaccatagaa 47068968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 7574171 - 7574116
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||| | |||||| ||| || ||||||||||||||||||||    
T  7574171 ttttgtgaaacaagagtactggtacactaaaatttttgagtgtaccgtagaagttc 7574116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 18922927 - 18922981
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||    |||||||||||||||||||||||| |||||||||    
T  18922927 tttgtgaaacaagagtattagtacactcaaaattgtgagtgtaccatagaagttc 18922981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39444312 - 39444370
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||  ||||||||||||| | ||| |||| |||||||||    
T  39444312 atattttgtgaaacaagagtaccagtacactcaaaattataagtataccatagaagttc 39444370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40947033 - 40946992
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtga 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  40947033 atattttgtaaaacaagagtaccggtacactcaaaattgtga 40946992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 15091017 - 15091072
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||| || ||||||    
T  15091017 attttgtgaaataacagtaccg-tacactcaaaattgtgagtgtaccataaaagttc 15091072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 27426778 - 27426830
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    ||||||||||| ||||| | || |||||||||| |||||||||||||||||||    
T  27426778 attttgtgaaataagagaatcggtacactcaaatttgtgagtgtaccgtagaa 27426830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 2038153 - 2038097
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||| ||||  ||||||||||||||||  |||||| |||||||||    
T  2038153 attttgtgcaacaagaatacctgtacactcaaaattgtggatgtaccatagaagttc 2038097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10453627 - 10453685
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  10453627 atattttgtgaaacaaaagtaccgatacactcaaaattgtgagtgtaccatagaagttc 10453685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16730070 - 16730128
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  16730070 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 16730128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32063585 - 32063529
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagt 57  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  32063585 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagt 32063529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3882178 - 3882236
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  3882178 atattttgtgaaacaagagtaccgatacactcaaaattgtgaatgtatcatagaagttc 3882236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 25684410 - 25684468
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  25684410 atattttgtgaaacaagagtaccggtacactcaaaattatgagtgtaccatagaagttc 25684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 31236648 - 31236594
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  31236648 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaa 31236594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43411577 - 43411519
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  43411577 atattttgtgaaacaagagtaccggtacactcaaaattgttagtgtaccatagaagttc 43411519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22798127 - 22798074
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtaga 54  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  22798127 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccataga 22798074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8068379 - 8068323
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagt 57  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  8068379 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagt 8068323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 28770004 - 28769948
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| |||||||||    
T  28770004 attttgtgaaacaagagtaccggtatactcaaaattgtgagtgtaccatagaagttc 28769948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 4095009 - 4095063
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  4095009 tttgtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttc 4095063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23189127 - 23189069
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||    
T  23189127 atattttgtgaaacaatagtactggtacactcaaaattgtgagtgtaccatagaagttc 23189069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42534453 - 42534395
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||    
T  42534453 atattttgtgaaacaaaagtatcggtacactcaaaattgtgagtgtaccatagaagttc 42534395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 2148185 - 2148129
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||| |||||||||    
T  2148185 attttgtgaaacaagagtaccattacacttaaaattgtgagtgtaccatagaagttc 2148129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22279275 - 22279219
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  22279275 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccgttgaagttc 22279219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 9530713 - 9530767
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  9530713 tttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttc 9530767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15726272 - 15726330
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||| ||||| |||||| || ||||||    
T  15726272 atattttgtgaaacaagagtaccggtacactcaaaaatgtgaatgtaccataaaagttc 15726330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37313899 - 37313853
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgta 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  37313899 atattttgtgaaacaagagtaccagtacactcaaaattgtgagtgta 37313853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39540779 - 39540721
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||| || || |||||||||||||||||||||||| |||||||||    
T  39540779 atattttatgaaacaagaataacggtacactcaaaattgtgagtgtaccatagaagttc 39540721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40340775 - 40340833
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||| || ||||||    
T  40340775 atattttatgaaacaagagtaccgggacactcaaaattgtgagtgtaccataaaagttc 40340833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41631565 - 41631623
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||  ||||||||||||| | |||||||| |||||||||    
T  41631565 atattttgtgaaacaagagtaccagtacactcaaaattataagtgtaccatagaagttc 41631623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 13588922 - 13588866
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||| ||||||| |||||||||||||||| ||||||| |||||||||    
T  13588922 attttgtgcaacaaaagtaccggtacactcaaaattgtgggtgtaccatagaagttc 13588866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 19126261 - 19126317
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||| |||||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  19126261 attttatgaaacaagagtaccgttacacttaaaattatgagtgtaccatagaagttc 19126317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 32624526 - 32624581
Alignment:
Q  4 ttttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||||| |||||| ||| || ||||| ||||||||||||||    
T  32624526 ttttgtgaaacaagagtaccggtacactaaaatttctgagtataccgtagaagttc 32624581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10688740 - 10688798
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| ||||||||||||||||||| | |||||| |||||||| | |||||||||    
T  10688740 atattttgtaaaacaagagtaccgatacatttaaaattatgagtgtatcatagaagttc 10688798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 37963052 - 37962997
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||||||| ||||||  || || |||||||||| ||||||||    
T  37963052 attttgtgaaacaagagtaccggtacactacaatttctgagtgtaccatagaagtt 37962997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 2526518 - 2526576
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  2526518 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 2526576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10779051 - 10778993
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  10779051 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 10778993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44998757 - 44998815
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  44998757 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 44998815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 46630705 - 46630648
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  46630705 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagtt 46630648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24292325 - 24292383
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  24292325 atattttgtgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 24292383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36569995 - 36570053
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  36569995 atattttgtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttc 36570053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38955102 - 38955044
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  38955102 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 38955044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42244597 - 42244539
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  42244597 atattttgtaaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 42244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16004593 - 16004535
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  16004593 atattttttgaaataagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 16004535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21515336 - 21515394
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| | |||||||||    
T  21515336 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttc 21515394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 27967861 - 27967915
Alignment:
Q  5 tttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  27967861 tttgtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttc 27967915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 33612872 - 33612928
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  33612872 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttc 33612928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 48549724 - 48549677
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtac 48  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||    
T  48549724 atattttgtgaaacaagagtatcggtacactcaaaattgtgagtgtac 48549677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52257479 - 52257537
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| |||||| |||||||||    
T  52257479 atattttatgaaacaagagtaccaatacactcaaaattatgaatgtaccatagaagttc 52257537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 46633683 - 46633638
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgt 46  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  46633683 atattttgtaaaacaagagtaccggtacactcaaaattgtgagtgt 46633638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 46222052 - 46222004
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtacc 49  Q
    ||||||||||||| |||||||||| || |||||||||||||||||||||    
T  46222052 atattttgtgaaagaagagtaccggtatactcaaaattgtgagtgtacc 46222004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 54499923 - 54499979
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||  |||||||||    
T  54499923 attttgtgaaacaagagtaccggtacactcaaaattatgaatgtacgatagaagttc 54499979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45629456 - 45629513
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||| ||||| ||||||||||||| ||| |||||| || |||||    
T  45629456 atattttgtgaaacaagaataccggtacactcaaaattatgaatgtaccataaaagtt 45629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 56017134 - 56017187
Alignment:
Q  2 tattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||| | |||||||||||||| |||||| ||| |||||||||||||||||||    
T  56017134 tattttataaaacaagagtaccggtacactaaaatttgtgagtgtaccgtagaa 56017187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 27636089 - 27636144
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||| ||||||||||||| |||||| |||  | |||||||||||||||||||    
T  27636089 attttgtggaacaagagtaccggtacactaaaatatatgagtgtaccgtagaagtt 27636144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28394415 - 28394473
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  28394415 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 28394473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37725898 - 37725956
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  37725898 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 37725956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2316898 - 2316840
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  2316898 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 2316840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3724001 - 3723943
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  3724001 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 3723943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16814911 - 16814853
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||    
T  16814911 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttc 16814853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16854191 - 16854133
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||    
T  16854191 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtatcatagaagttc 16854133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18576360 - 18576302
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  18576360 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccataaaagttc 18576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21836632 - 21836690
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  21836632 atattttgtgaaacaagagcaccggtacactcaaaattgtgagtgtaccatagaagttc 21836690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36947542 - 36947488
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaa 55  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  36947542 atattttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaa 36947488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40533598 - 40533656
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  40533598 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 40533656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45555729 - 45555786
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  45555729 atattttgtgaaataagagtaccggtacactcaaagttgtgagtgtaccgtagaagtt 45555786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 18009013 - 18008957
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||    
T  18009013 attttgtgaaacaagagtaccggtacactcaaaattgtaagtgtaccatagaagttc 18008957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5084899 - 5084841
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||  |||||||||    
T  5084899 atattttgtgaaacaagagtaccggtacactcaaaattatgagtgtacgatagaagttc 5084841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10711623 - 10711681
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||    
T  10711623 atattttgtgaaacaagagtaccggtacattcaaaattgtgagtgtacaatagaagttc 10711681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13568272 - 13568214
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  13568272 atattttgtaaaacaacagtaccggtacactcaaaattgtgagtgtaccatagaagttc 13568214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19635982 - 19636040
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||    
T  19635982 atattttgtgaaacaaaagtatcggtacactcaaaattgtgagtgtaccatagaagttc 19636040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19834575 - 19834633
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||    
T  19834575 atattttgtgaaacaaaagtatcggtacactcaaaattgtgagtgtaccatagaagttc 19834633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35292858 - 35292916
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  35292858 atattttatgaaacaagagtaccggtacacttaaaattgtgagtgtaccatagaagttc 35292916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 7504080 - 7504024
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  7504080 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccatagaagttc 7504024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 36049522 - 36049466
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  36049522 attttgtaaaacaagagtaccggtacactcaaaattgtgaatgtaccatagaagttc 36049466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6657794 - 6657850
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| ||||||||||||| || ||||||| |||||||||    
T  6657794 attttgtgcaacaagagtaccggtacactcaaaattatgggtgtaccatagaagttc 6657850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 44068361 - 44068417
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||||    
T  44068361 attttgtaaaacaagagtatcgatacactaaaatttctgagtgtaccgtagaagttc 44068417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 1860276 - 1860332
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| || |||||||||| |||||||||||||||| ||||| | |||||||||    
T  1860276 attttgtgcaataagagtaccggtacactcaaaattgtgggtgtatcatagaagttc 1860332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33423792 - 33423744
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtacc 49  Q
    ||||||| |||||||||||||||  |||||||||||||||||| |||||    
T  33423792 atattttatgaaacaagagtaccagtacactcaaaattgtgagggtacc 33423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 39878977 - 39878921
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||  ||||| ||||||| ||||||||||||||||| |||||| |||||||||    
T  39878977 attttgtacaacaaaagtaccggtacactcaaaattgtgaatgtaccatagaagttc 39878921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 291970 - 292027
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagtt 58  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  291970 atattttgtgaaacaagagtactgatacactcaaaattgtgagtgtaccatagaagtt 292027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 34969781 - 34969837
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  34969781 attttgtgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 34969837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29638794 - 29638736
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  29638794 atattttgtgaaacaagagtactggtacactcaaaattgtgagtgtaccatagaagttc 29638736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35224889 - 35224831
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  35224889 atattttgtgaaacaatagtaccggtacactcaaaattgtgagtgtaccatagaagttc 35224831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 34315182 - 34315126
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34315182 attttgtgcaacaagagtaccgatacactcaaaattgtgggtgtaccatagaagttc 34315126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1339201 - 1339259
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  1339201 atattttttgaaaaaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 1339259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18871270 - 18871328
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  18871270 atattttttgaaaaaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 18871328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32518807 - 32518749
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||    
T  32518807 atattttgtgaaacaggagtactggtacactcaaaattgtgagtgtaccatagaagttc 32518749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33954799 - 33954857
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||    
T  33954799 atattttgtgaaactagagtaccgatgcactcaaaattgtgagtataccatagaagttc 33954857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 24025783 - 24025839
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  24025783 attttgtgcaacaagagtaccggtacactcaaaattgtgggtgtaccgttgaagttc 24025839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6015864 - 6015821
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagt 44  Q
    |||||||||||||||||||||| | |||||||||||||||||||    
T  6015864 atattttgtgaaacaagagtactggtacactcaaaattgtgagt 6015821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15728 - 15786
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  15728 atattttatgaaacaagagtaccggtacactcaaaattgtgagtgtaccatagaagttc 15786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 166479 - 166421
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||    
T  166479 atattttgtgaaacaagagtaccggtacactcaaaattgtgaatgtaccatataagttc 166421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 13952 - 14008
Alignment:
Q  3 attttgtgaaacaagagtaccgatacactcaaaattgtgagtgtaccgtagaagttc 59  Q
    |||||||| ||||| ||||||| ||||||||||||| || ||||||| |||||||||    
T  13952 attttgtgcaacaaaagtaccggtacactcaaaattatgggtgtaccatagaagttc 14008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17557 - 17514
Alignment:
Q  1 atattttgtgaaacaagagtaccgatacactcaaaattgtgagt 44  Q
    |||||||||||||||||| ||||||| | |||||||||||||||    
T  17557 atattttgtgaaacaagaataccgatcccctcaaaattgtgagt 17514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University