View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18507_low_4 (Length: 506)
Name: NF18507_low_4
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 51362926 - 51363418
Alignment:
| Q |
18 |
atttataggatgtatatcaatccattcatgtttcaccnnnnnnnnnn-tccttttatgttttgtattttcttaaagatgatacaaataatttgttctttt |
116 |
Q |
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| T |
51362926 |
atttataggatgtatatcaatcctttcatgtgtcaccaaaaaaaaaaatccttttatgttttgtattttcttaaagatgatacaaataatttgttctttt |
51363025 |
T |
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| Q |
117 |
gcatgtggtcatgtgaaaaattaggatgaagttatttctcccacccttcacatcttgttgggattatgaaatccgaaatgttatagagtgttcaaggata |
216 |
Q |
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| T |
51363026 |
gcatgtggtcatgtgaaaaattaggatgaagttatttttcccacccttcacatcttgttggg-ttatgaaatccgaaatgttatagagtattcaaggata |
51363124 |
T |
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| Q |
217 |
ttttaatgtgtttttacattgttcaggttctataatctaaaatgttgtatgacacacaagaaactattaggtcggatnnnnnnntatttatttctattgg |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
51363125 |
ttttaatgtgtttttacactgttcaggttctataatctaaaatgttgtatgacacgcgagaaactattaggtcggataaaaaaatatttatttctattgg |
51363224 |
T |
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| Q |
317 |
aaaagattgttaggcctttggttgcagtgggcatatgcagttgcactacctatggactcgtttctttttaatgttatctttgggctttccaacaaaattt |
416 |
Q |
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| T |
51363225 |
taaagattgttaggcctttggttgcagtgggcatatgcagttgcactacctatggactcgtttctttttaatgttatctttgggctttccaacaaaattt |
51363324 |
T |
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| Q |
417 |
cgcgcgtaataaaactataaactgctt----cttccaaagtattaatctgctaatattatattacagttatctaactaaccattccattcaaat |
506 |
Q |
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| T |
51363325 |
cgcgcgtaataaaactataaaatgcttcttccttccaaagtattaatctgctaatattatattacagttatctaactaaccattccattcaaat |
51363418 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 10885166 - 10885113
Alignment:
| Q |
155 |
tcccacccttcacatcttgttgggattatgaaatccgaaatgttatagagtgtt |
208 |
Q |
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| T |
10885166 |
tcccaccctccacatctggttaggattatgaaatccgaaacgttgtagggtgtt |
10885113 |
T |
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