View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18507_low_7 (Length: 421)
Name: NF18507_low_7
Description: NF18507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18507_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34323016 - 34323319
Alignment:
| Q |
1 |
tccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaagacacgaaat |
100 |
Q |
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| T |
34323016 |
tccatctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaagacacgaaat |
34323115 |
T |
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| Q |
101 |
ggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaatgacccttttgcattggaaggaaaattaccaa |
200 |
Q |
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| T |
34323116 |
ggatctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaaaattaccaa |
34323215 |
T |
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| Q |
201 |
caagaagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcatcttcattatactttgaattgaaaatatgtgtgtagtttatga |
300 |
Q |
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| T |
34323216 |
caagaagaataatcaagagaattggtataagcgacatgttgagttgttgtagcctcattttcattacactttgaattgaaaatatgtgtgtagtttatga |
34323315 |
T |
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| Q |
301 |
tttg |
304 |
Q |
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|||| |
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| T |
34323316 |
tttg |
34323319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 34311951 - 34311701
Alignment:
| Q |
5 |
tctggagtttccttccagtctactctagctggtgacattgtcatggatggttcagttttttcgactccaaatggaatttgttctaagacacgaaatggat |
104 |
Q |
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| T |
34311951 |
tctggagtttccttccagtctactctagctggtgacagtgacatggatggttcgtttttttcaactccaaaggggatttgttctaagacacgaaatggat |
34311852 |
T |
|
| Q |
105 |
ctggaaaacgatcagacaagagatcggacaagagtgtgttgggtgaatccatgaatggtagcaatgacccttttgcattggaaggaaaattaccaacaag |
204 |
Q |
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| T |
34311851 |
cggggaaacgatcagaccagagatcggataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaataaccaaca-- |
34311754 |
T |
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| Q |
205 |
aagaataagcaagagaattggtataagcgacatgttgagttgttgtagcctcat |
258 |
Q |
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| T |
34311753 |
-agaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
34311701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 34323359 - 34323441
Alignment:
| Q |
322 |
cttcaatttggtggaagtagaaatgctgatgtgttctatttataggtttaaaatgttgcatgcatgattcttgaagattctat |
404 |
Q |
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| T |
34323359 |
cttcaatttggtggaagtagaaatgctgatgtgttgtatttataggtttaaaatgttgcatgcataattcttgaagattctat |
34323441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 33426226 - 33426181
Alignment:
| Q |
5 |
tctggagtttccttccagtctactctagctggtgacattgtcatgg |
50 |
Q |
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| T |
33426226 |
tctggagtttccttccagtctactttaaccggtgacaatgtcatgg |
33426181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 34311622 - 34311573
Alignment:
| Q |
353 |
tgttctatttataggtt-taaaatgttgcatgcatgattcttgaagattc |
401 |
Q |
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|||| |||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
34311622 |
tgttatatttataggttgtaaaaagttgcatgcatggttcttgaagattc |
34311573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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