View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_high_1 (Length: 479)
Name: NF18508_high_1
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 36264695 - 36264227
Alignment:
| Q |
16 |
atatgtgcaaaacaaaaaacaacggttgcatatactccatcccacaatatttgttgcatt-------------------aaaatgaagataatgaataaa |
96 |
Q |
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| T |
36264695 |
atatgtgcaaaacaaaaaacaacggttgcatatactccatcccacaatatttgttgcatttgattatttcacttatattaaaatgaagataatgaataaa |
36264596 |
T |
|
| Q |
97 |
agagaatagtcattttactaatttatccatataaattattggcgtgttctcatcacaaaaaatgtaaagagtaataacttaggagtggtgtaaattgtat |
196 |
Q |
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| T |
36264595 |
agagaatagtcattttactaatttatccatataaattattggcgtgttctcatcacaaaaaatgtaaagagtaataacttaggagtggtgtaaattgtat |
36264496 |
T |
|
| Q |
197 |
taatttaagggtacaattaaaaaatatcaaataaacaaaagtgacaattttttgggacaatcttcttcttttacaaatatgacaattattatgggataga |
296 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36264495 |
taatttaaaggtacaattaaaaaatatcaaataaacaaaagtgacaattttttgggacaatcttcttcttttacaaatatgacaattattatgggataga |
36264396 |
T |
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| Q |
297 |
aatagaaggagtatatcacattggaccacaatgctatgtctagcaaacgtgcttgacgggttgggagaagaaac-nnnnnnnggtacacaaacgtaatga |
395 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36264395 |
aat---aggagtatatcacattggaccacaatgctatgtctagcaaacgtgcttgacgggttgggagaagaaacaaaaaaaaggtacacaaacgtaatga |
36264299 |
T |
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| Q |
396 |
aaggggcacttctcagtattaaagcacataccaaccatagttttacctcaacttcaatgagaatcatggtta |
467 |
Q |
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| T |
36264298 |
aaggggcacttctcagtatcaaagcacataccaaccatagttttacctcaacttcaatgagaatcatggtta |
36264227 |
T |
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