View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18508_high_2 (Length: 449)
Name: NF18508_high_2
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 109 - 428
Target Start/End: Original strand, 869826 - 870146
Alignment:
| Q |
109 |
tgaattaaccaaactcctaacacaaaagtaagtaaccttcagtatggtattnnnnnnngtaaatttcagtattcatcaaaccaagcgacaatcaaattga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
869826 |
tgaattaaccaaactcctaacacaaaagtaagtaaccttcagtatggtattaaaaaaagtaactttcagtattcatcaaaccaagtgacaatcaagttga |
869925 |
T |
|
| Q |
209 |
ctatgattagtgtgctcatgaaaagttggatttaggagaatttaaattgcagacttattattacaatagaggacatgacactgac-caagaagctcgaga |
307 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
869926 |
atatgcttagtgtgctcgtgaaaagttggatttaggagaatttaaattgcagacttattattacaatagaggacatgacactgacacaagaagctcgaga |
870025 |
T |
|
| Q |
308 |
tccgctaatagtcaaagcaactgaatttcgcatgaaatgttagcaagacacgatattcagcttcaatgaagttctagataatgtagtctggttttttgac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
870026 |
tccgctaatagtcaaagcaactgaatttcgcatgaaatgttagcaagacacgatattcagcttcaatgaagttctagataatgtagtctgcttttttgac |
870125 |
T |
|
| Q |
408 |
ttccagagttccaatacatga |
428 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
870126 |
ttccagagttccaatacatga |
870146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 868837 - 868886
Alignment:
| Q |
1 |
ttcacaagagcagtcatccattagaccattactcgaaatacaactgacgg |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
868837 |
ttcacaagagcagtcatccattagaccattactcgaaatacaactgacgg |
868886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University