View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18508_high_6 (Length: 308)

Name: NF18508_high_6
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18508_high_6
NF18508_high_6
[»] chr1 (16 HSPs)
chr1 (1-293)||(5954900-5955192)
chr1 (157-241)||(2193323-2193407)
chr1 (163-218)||(29020085-29020140)
chr1 (157-232)||(46536633-46536708)
chr1 (166-241)||(30264140-30264215)
chr1 (157-219)||(4489325-4489387)
chr1 (164-241)||(4064117-4064194)
chr1 (191-243)||(7330516-7330568)
chr1 (163-243)||(8772461-8772541)
chr1 (161-197)||(30941528-30941564)
chr1 (178-213)||(8376330-8376365)
chr1 (164-243)||(12721812-12721891)
chr1 (164-243)||(16632762-16632841)
chr1 (168-243)||(17969337-17969412)
chr1 (157-211)||(15330851-15330905)
chr1 (1-52)||(5949237-5949285)
[»] chr2 (11 HSPs)
chr2 (178-243)||(14845950-14846015)
chr2 (157-243)||(37519736-37519823)
chr2 (163-242)||(8033331-8033410)
chr2 (164-243)||(31915107-31915186)
chr2 (157-213)||(18967757-18967813)
chr2 (158-232)||(29140155-29140230)
chr2 (163-218)||(34467046-34467101)
chr2 (157-243)||(16209872-16209958)
chr2 (156-241)||(34463356-34463442)
chr2 (157-227)||(35005209-35005279)
chr2 (188-241)||(31598124-31598177)
[»] chr6 (3 HSPs)
chr6 (163-243)||(7592698-7592778)
chr6 (157-229)||(29694291-29694363)
chr6 (157-218)||(6454543-6454603)
[»] chr4 (14 HSPs)
chr4 (157-243)||(33395307-33395393)
chr4 (164-243)||(42009628-42009707)
chr4 (163-242)||(47519294-47519373)
chr4 (157-242)||(34341395-34341480)
chr4 (163-243)||(16502473-16502553)
chr4 (157-213)||(52838001-52838057)
chr4 (157-243)||(35422391-35422477)
chr4 (163-213)||(41260064-41260114)
chr4 (175-232)||(6086033-6086089)
chr4 (178-243)||(11086242-11086306)
chr4 (156-212)||(21635709-21635765)
chr4 (157-229)||(37626704-37626776)
chr4 (157-209)||(41163046-41163098)
chr4 (178-218)||(54335230-54335270)
[»] chr8 (11 HSPs)
chr8 (159-243)||(3670513-3670598)
chr8 (157-226)||(29374567-29374636)
chr8 (163-243)||(34653347-34653427)
chr8 (161-203)||(1342334-1342376)
chr8 (157-212)||(13636244-13636299)
chr8 (157-212)||(13736657-13736712)
chr8 (164-243)||(41168690-41168769)
chr8 (157-241)||(8488610-8488695)
chr8 (188-241)||(27982289-27982342)
chr8 (188-241)||(28039591-28039644)
chr8 (163-219)||(12653993-12654049)
[»] chr5 (9 HSPs)
chr5 (157-218)||(25731215-25731276)
chr5 (157-243)||(17317343-17317429)
chr5 (157-243)||(25254894-25254980)
chr5 (157-243)||(25318684-25318770)
chr5 (157-212)||(1638031-1638086)
chr5 (157-248)||(7736268-7736359)
chr5 (157-243)||(35626560-35626646)
chr5 (159-212)||(10418601-10418654)
chr5 (157-218)||(26402062-26402123)
[»] chr3 (10 HSPs)
chr3 (157-212)||(19153783-19153838)
chr3 (157-237)||(42426187-42426263)
chr3 (157-212)||(44765328-44765383)
chr3 (167-248)||(4195395-4195476)
chr3 (192-254)||(20137662-20137724)
chr3 (196-254)||(23278001-23278059)
chr3 (157-218)||(32375276-32375337)
chr3 (161-213)||(46751081-46751133)
chr3 (167-243)||(50958619-50958695)
chr3 (157-229)||(54153856-54153928)
[»] scaffold0042 (1 HSPs)
scaffold0042 (157-243)||(83592-83678)
[»] scaffold0007 (1 HSPs)
scaffold0007 (163-243)||(246574-246654)
[»] chr7 (8 HSPs)
chr7 (157-249)||(7833581-7833673)
chr7 (161-209)||(47357175-47357223)
chr7 (156-243)||(45411236-45411323)
chr7 (164-226)||(40058990-40059052)
chr7 (157-222)||(22680720-22680785)
chr7 (174-219)||(23865866-23865911)
chr7 (157-229)||(31860338-31860410)
chr7 (159-243)||(48983065-48983148)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 5954900 - 5955192
Alignment:
Q  1 atatttcccctgcctttctggtgtatta-ttactgatgagcaatagctatttannnnnnnncctttcttcttgcattccacatgagattgacatatgtta 99  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||    
T  5954900 atatttcccctgcctttctggtgtatttgttactgatgagcaatagctatttattttttt-cctttcttcgtgcattccacatgagattgacatatgtta 5954998  T
Q  100 ggattttccccaactatctttgtaacatctttatacgctctaggtaagcatgtaacatcttaacaataattacacaacttttttatgtaaacttacttat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5954999 ggattttccccaactatctttgtaacatctttatacgctctaggtaagcatgtaacatcttaacaataattacacaacttttttatgtaaacttacttat 5955098  T
Q  200 tttaatactttaacaaatgtctcaagggcactcgttaacattctgcataataaaatgattgtagataaaatgagcaaatccaaacatatctaga 293  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5955099 tttaatactttaaaaaatgtcttaagggcactcgttaacattctgcatagtaaaatgattgtagataaaatgagcaaatccaaacatatctaga 5955192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 2193323 - 2193407
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    ||||| |||| ||||||| ||||||  ||||||| |||||||||||||||||||||| |||| | |||||||| | |||||||||    
T  2193323 tcttatcaatgattacaccacttttcgatgtaaatttacttattttaatactttaaccaatgccacaagggcaatggttaacatt 2193407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 29020140 - 29020085
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||||| ||||    
T  29020140 caataattacacaactttttattgtaaaattacttattttaatactttaaccaatg 29020085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 46536708 - 46536633
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactc 232  Q
    ||||| |||||| ||||||||||| |  || ||| |||||||||||||||||||||  ||||||||||||||||||    
T  46536708 tcttatcaataactacacaactttgtattgcaaaattacttattttaatactttaatcaatgtctcaagggcactc 46536633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 30264140 - 30264215
Alignment:
Q  166 taattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    ||||||||||| |||||  |||||| ||||||||||||||| |||||||||| |||||| | ||||| ||| ||||    
T  30264140 taattacacaattttttgttgtaaagttacttattttaataatttaacaaatatctcaatgacactcattagcatt 30264215  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 4489325 - 4489387
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgt 219  Q
    ||||| |||| |||||| ||||||| | || |||||||||||||||||||||||||| |||||    
T  4489325 tcttatcaatgattacataacttttctttgcaaacttacttattttaatactttaaccaatgt 4489387  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 4064194 - 4064117
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    ||||||||||||||||||| ||  |||||||||  ||||||||||||||| ||| ||| || | ||||| ||||||||    
T  4064194 aataattacacaactttttaattcaaacttactacttttaatactttaaccaatatcttaaagacactcattaacatt 4064117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 7330568 - 7330516
Alignment:
Q  191 cttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||| ||||||||| ||||| |||||| ||||| ||||||||||    
T  7330568 cttacttattttagtactttaaccaatgtttcaaggacactcattaacattct 7330516  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 8772461 - 8772541
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||||||||| ||||||  ||| ||| |||||||||||| ||||||||| |||| | |||||||| | |||| ||||||    
T  8772461 caataattacaccacttttcgatgcaaatttacttattttagtactttaaccaatgccccaagggcaatggttagcattct 8772541  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30941528 - 30941564
Alignment:
Q  161 aacaataattacacaacttttttatgtaaacttactt 197  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30941528 aacaataattacacaactttttcatgtaaacttactt 30941564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 8376365 - 8376330
Alignment:
Q  178 ttttttatgtaaacttacttattttaatactttaac 213  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8376365 ttttttatgcaaacttacttattttaatactttaac 8376330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 12721812 - 12721891
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||| || |||||||| ||||||| ||||||||  | |||||  ||||||||| |  ||||||||||||||||    
T  12721812 aataattacacgacatttttatgcaaacttatttattttagaattttaatcaatgtctcatgaacactcgttaacattct 12721891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 16632762 - 16632841
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||| |||||  |  ||| || ||||||||||||||||||||||| |||||| |  |||||||| ||||||    
T  16632762 aataattacacaattttttattacaaagttgcttattttaatactttaacaaatatctcaaagctactcgttatcattct 16632841  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 17969337 - 17969412
Alignment:
Q  168 attacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||||||||||||  || ||| |||||||||||| ||||||||| |||||| ||| | ||||| ||| ||||||    
T  17969337 attacacaactttttgttgcaaaattacttattttagtactttaaccaatgtcccaacgacactcattagcattct 17969412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 15330905 - 15330851
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatacttta 211  Q
    ||||| |||||||||||||| ||||  ||| |||||| |||||||||||||||||    
T  15330905 tcttagcaataattacacaatttttcgatgcaaactttcttattttaatacttta 15330851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5949237 - 5949285
Alignment:
Q  1 atatttcccctgcctttctggtgtattattactgatgagcaatagctattta 52  Q
    ||||||||||| ||||||||||||| |||   ||||||||||||||||||||    
T  5949237 atatttcccctacctttctggtgtactat---tgatgagcaatagctattta 5949285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 14845950 - 14846015
Alignment:
Q  178 ttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||| ||||||    
T  14845950 ttttttatgtaaacttacttattttaatactttaaccaatgactcaagggcaatggttagcattct 14846015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 37519736 - 37519823
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaactt--acttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||||| || | ||||||||| ||||||  |||||||||||||||||||| |||| |||||||||| | |||| ||||||    
T  37519736 tcttaacaataattaaacca-ttttttatgcaaacttttacttattttaatactttaaccaatgactcaagggcaatggttagcattct 37519823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 8033331 - 8033410
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattc 242  Q
    |||||||||||| ||||||  ||| ||| |||||||||||||||||||||| |||| | |||||||| | |||| |||||    
T  8033331 caataattacaccacttttcgatgcaaatttacttattttaatactttaaccaatgccccaagggcaatggttagcattc 8033410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 31915107 - 31915186
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||| ||||||  ||| |||||||||||||||||||||||||| |||| | ||||| || | |||| ||||||    
T  31915107 aataattacaccacttttcgatgcaaacttacttattttaatactttaaccaatgccccaaggacaatggttaccattct 31915186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 18967757 - 18967813
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaac 213  Q
    |||||||||||||||||||||||||   || |||||||| |||||||||| ||||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaac 18967813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 29140230 - 29140155
Alignment:
Q  158 cttaacaataattacacaacttttttatgt-aaacttacttattttaatactttaacaaatgtctcaagggcactc 232  Q
    |||| |||||||||||||| |||||| | | ||| |||||||||||| ||||||||| ||| |||||||| |||||    
T  29140230 cttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaatatctcaaggtcactc 29140155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 34467046 - 34467101
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    |||||||||||||||||| |  | |||| |||||||||||||||||||||| ||||    
T  34467046 caataattacacaactttatattataaatttacttattttaatactttaactaatg 34467101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 16209872 - 16209958
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||| ||||| ||||||||||||||  | |||| |||||||||||| ||||||||| ||||   ||||| ||||| ||| ||||||    
T  16209872 tcttagcaatagttacacaactttttgttttaaagttacttattttagtactttaaccaatgctacaaggacactcattagcattct 16209958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 34463356 - 34463442
Alignment:
Q  156 atcttaacaataattacacaacttttt-tatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    |||||| |||||||||||||||||||| | |  ||| |||||||||||| ||||||||| |||   |||||||||||  ||||||||    
T  34463356 atcttagcaataattacacaactttttattttaaaaattacttattttagtactttaactaatacttcaagggcacttattaacatt 34463442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 35005279 - 35005209
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaaggg 227  Q
    ||||| |||| ||||||| ||||||  ||| |||||||||||||||| ||||||||| |||| | ||||||    
T  35005279 tcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaaccaatgccccaaggg 35005209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 31598124 - 31598177
Alignment:
Q  188 aaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    |||||||||||||||| || |||||| |||||||||||| || | |||||||||    
T  31598124 aaacttacttattttagtattttaaccaatgtctcaaggacaattgttaacatt 31598177  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 7592778 - 7592698
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||||  |||||||||| | ||||| ||||||||||    
T  7592778 caataattacatcactttttaatttaaacttacttattttaatactttaatcaatgtctcaaagacactctttaacattct 7592698  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 29694363 - 29694291
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggca 229  Q
    |||||||||||||||||  ||||||  ||| |||||||||||||||| ||||||||| ||||||  |||||||    
T  29694363 tcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaaccaatgtcctaagggca 29694291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 6454603 - 6454543
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||| || |||||| ||||    
T  6454603 tcttaacaataattacacaac-tttcgatgcaaacttacttattttagtattttaaccaatg 6454543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 33395393 - 33395307
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||| ||||||||| || ||||||| ||||||||||||| |||||||||||||||| |||||| ||| |||| | |||| ||||||    
T  33395393 tcttagcaataattataccactttttgatgtaaacttactcattttaatactttaaccaatgtcccaaaggcaattgttagcattct 33395307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 42009707 - 42009628
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||||||||| ||  ||||||| | ||||||| |||||||| |||||||||||| || || ||||||||||    
T  42009707 aataattacacaactttttaattcaaacttattaattttaacactttaactaatgtctcaaggacattcattaacattct 42009628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 47519294 - 47519373
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattc 242  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| |||||||| |||| | ||||  ||||| |||||||||    
T  47519294 caataattacacaactttttaatgcaaacttactaattttaacactttaaccaatgccccaagaacactcattaacattc 47519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 34341480 - 34341395
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattc 242  Q
    ||||| |||||||||||||||||||| ||  |||||||| ||||| |  |||||||| |||||||||||  ||||||||| |||||    
T  34341480 tcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatgtctcaagaacactcgttagcattc 34341395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 16502473 - 16502553
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||| ||||||||||||||  | || | |||||||||||| ||||||||| |||| | ||||||||||| ||| ||||||    
T  16502473 caatatttacacaactttttgttttagagttacttattttagtactttaaccaatgccccaagggcactcattagcattct 16502553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 52838001 - 52838057
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaac 213  Q
    ||||||||||||||| || | ||||  ||| ||||||||||||||||||||||||||    
T  52838001 tcttaacaataattataccatttttcgatgcaaacttacttattttaatactttaac 52838057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 35422477 - 35422391
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||| |||||||||||| | ||||| ||| ||||||||| ||||||| ||||||||  ||| | ||| | || |||||||||||||    
T  35422477 tcttatcaataattacactattttttaatgcaaacttactaattttaacactttaaccgatgccccaaagacattcgttaacattct 35422391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 41260064 - 41260114
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaac 213  Q
    |||| ||||||| ||||||  ||| ||||||||||||||||||||||||||    
T  41260064 caatgattacaccacttttcgatgcaaacttacttattttaatactttaac 41260114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 6086033 - 6086089
Alignment:
Q  175 aacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactc 232  Q
    |||||||||| | ||||||||||| |||||||||||||| |||| || ||||||||||    
T  6086033 aacttttttacgcaaacttacttactttaatactttaaccaatgcct-aagggcactc 6086089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 11086306 - 11086242
Alignment:
Q  178 ttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||  |||||||||||||||||||||||||| |||| | |||||||| | |||| ||||||    
T  11086306 ttttttatacaaacttacttattttaatactttaaccaatg-cccaagggcaatggttagcattct 11086242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 21635709 - 21635765
Alignment:
Q  156 atcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    ||||| |||||||||| |  | ||||| ||||||||||| |||||||||||||||||    
T  21635709 atcttgacaataattaaatcaatttttgatgtaaacttatttattttaatactttaa 21635765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 37626776 - 37626704
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggca 229  Q
    ||||| |||| || |||| ||||||  ||| |||||||||||||||| ||||||||| |||| | ||||||||    
T  37626776 tcttatcaatgatcacaccacttttcgatgcaaacttacttattttagtactttaaccaatgccccaagggca 37626704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 41163098 - 41163046
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactt 209  Q
    ||||| |||||||||||| ||||||  ||||||||| |||||||||| |||||    
T  41163098 tcttagcaataattacaccacttttcgatgtaaactaacttattttagtactt 41163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 54335230 - 54335270
Alignment:
Q  178 ttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    ||||||||| |||||||||||||||| ||||||||| ||||    
T  54335230 ttttttatgcaaacttacttattttagtactttaaccaatg 54335270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 3670598 - 3670513
Alignment:
Q  159 ttaacaataattacacaacttttttatgtaaacttacttatttt-aatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| || |||||||| |||||  ||| | ||||||||||||||||    
T  3670598 ttaacaataattacacaactttttaataaaaacttacttattttcaaaactttaaccaatgttccaaagacactcgttaacattct 3670513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 29374567 - 29374636
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagg 226  Q
    ||||| |||||||||||| ||||||  ||||||| |||||||||||| ||||||||| ||||||||||||    
T  29374567 tcttagcaataattacaccacttttcgatgtaaatttacttattttactactttaaccaatgtctcaagg 29374636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 34653347 - 34653427
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||||||||||   ||||  |||||||||||| ||||||||  |||| |||||||||||| |||| ||||||    
T  34653347 caataattacacaactttttgtagtaatgttacttattttagtactttaatcaatgcctcaagggcactagttatcattct 34653427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 1342376 - 1342334
Alignment:
Q  161 aacaataattacacaacttttttatgtaaacttacttatttta 203  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  1342376 aacaatgattacacaacttttttatgaaaacttacttatttta 1342334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 13636299 - 13636244
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    |||||||||||| |||||||||||||  |  ||| |||||||||||||||||||||    
T  13636299 tcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 13736712 - 13736657
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    |||||||||||| |||||||||||||  |  ||| |||||||||||||||||||||    
T  13736712 tcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 41168690 - 41168769
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||  ||||||  ||| |||||||||||||||| ||||||||| ||| ||  ||||||| | |||||||||||    
T  41168690 aataattacatcacttttcaatgcaaacttacttattttagtactttaactaatatcctaagggcaatggttaacattct 41168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 8488695 - 8488610
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttactt-attttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    ||||| ||||||||| || ||||||| | | |||||||||| ||||||  |||||||| |||| | ||||||||||||||| ||||    
T  8488695 tcttagcaataattataccactttttgaggcaaacttactttattttagaactttaaccaatgccccaagggcactcgttagcatt 8488610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 27982342 - 27982289
Alignment:
Q  188 aaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    |||||||||||||||| ||||||||| |||| | |||||||| | |||||||||    
T  27982342 aaacttacttattttagtactttaaccaatgccccaagggcaatggttaacatt 27982289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 28039644 - 28039591
Alignment:
Q  188 aaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacatt 241  Q
    |||||||||||||||| ||||||||| |||| | |||||||| | |||||||||    
T  28039644 aaacttacttattttagtactttaaccaatgccccaagggcaatggttaacatt 28039591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 12654049 - 12653993
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgt 219  Q
    ||||||||| || | ||||| |||||||||||| |||||||| |||||||| |||||    
T  12654049 caataattataccattttttaatgtaaacttacctattttaaaactttaaccaatgt 12653993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 25731276 - 25731215
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||    
T  25731276 tcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaaccaatg 25731215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 17317429 - 17317343
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||| |||||| |||| ||||||| ||| ||| ||| | ||||||| |||||||| |||| ||||||| ||||||||||||||||    
T  17317429 tcttaataataatcacaccactttttgatgcaaatttattaattttaacactttaaccaatgcctcaaggacactcgttaacattct 17317343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 25254894 - 25254980
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||| |||| | ||||||||  ||||||||| ||||||| || |||||  |||| ||||||| |||| ||||||||||    
T  25254894 tcttaacaataatcacactaattttttatacaaacttactaattttaacacgttaacctatgtttcaagggtactcattaacattct 25254980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 25318684 - 25318770
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||| |||| | ||||||||  ||||||||| ||||||| || |||||  |||| ||||||| |||| ||||||||||    
T  25318684 tcttaacaataatcacactaattttttatacaaacttactaattttaacacgttaacctatgtttcaagggtactcattaacattct 25318770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 1638031 - 1638086
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    ||||| |||||||||||||||||||| ||| ||||||| |||||||| | ||||||    
T  1638031 tcttagcaataattacacaactttttgatgcaaacttatttattttagttctttaa 1638086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 7736359 - 7736268
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattctgcata 248  Q
    ||||| |||| ||||| | ||||||  ||| |||||||||||||| | ||||||||| |||||| |||||||| | |||| |||||| ||||    
T  7736359 tcttagcaatcattacgccacttttcaatggaaacttacttatttaagtactttaaccaatgtcccaagggcaatggttagcattctccata 7736268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 35626646 - 35626560
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||| |||||||  ||| ||||||||||| ||| ||||| ||||||| || |||||  |||| |||| ||||||| ||||||||||    
T  35626646 tcttaccaataatcgcactacttttttatgcaaatttactaattttaacaccttaacccatgtatcaaaggcactcattaacattct 35626560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 10418654 - 10418601
Alignment:
Q  159 ttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    ||||||||||||||||||| ||||  |  ||| |||||||||||||||||||||    
T  10418654 ttaacaataattacacaacattttatttcaaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 26402062 - 26402123
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    |||||||||| |||||||||||||||  || ||| |||||||||||| |||| |||| ||||    
T  26402062 tcttaacaatgattacacaactttttattgaaaaattacttattttagtactctaaccaatg 26402123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 19153838 - 19153783
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    |||||||||||| ||||||| ||||| || |||||||||||||| |||||||||||    
T  19153838 tcttaacaataactacacaattttttgatataaacttacttattataatactttaa 19153783  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 42426263 - 42426187
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaa 237  Q
    |||||||||||||||||| ||||||||||| ||    ||||||||||| |||||||  |||||||||||||| ||| ||||    
T  42426263 tcttaacaataattacaccacttttttatgcaa----acttattttaacactttaatcaatgtctcaagggccctcattaa 42426187  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 44765328 - 44765383
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaa 212  Q
    ||||| |||||||||||| ||||||  ||| |||||||||||||||||||||||||    
T  44765328 tcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 4195395 - 4195476
Alignment:
Q  167 aattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattctgcata 248  Q
    |||||||| | ||||||||| |||||||||||||||| ||||||||| |||| | |||| ||| | |||| |||||| ||||    
T  4195395 aattacaccatttttttatgcaaacttacttattttagtactttaaccaatgccccaagagcaatggttagcattctccata 4195476  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 20137662 - 20137724
Alignment:
Q  192 ttacttattttaatactttaacaaatgtctcaagggcactcgttaacattctgcataataaaa 254  Q
    |||||||||||| |||| |||| |||||| |||||||||| |||| |||||| || |||||||    
T  20137662 ttacttattttagtactctaaccaatgtcccaagggcactagttagcattctccaaaataaaa 20137724  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 23278059 - 23278001
Alignment:
Q  196 ttattttaatactttaacaaatgtctcaagggcactcgttaacattctgcataataaaa 254  Q
    |||||||| |||| |||| ||||||||||||||||| |||| |||||| || |||||||    
T  23278059 ttattttagtactctaaccaatgtctcaagggcactagttagcattctccaaaataaaa 23278001  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 32375276 - 32375337
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatg 218  Q
    ||||| |||||||||||| ||||||  |||  ||||||||||||||| ||||||||| ||||    
T  32375276 tcttagcaataattacaccacttttcaatgctaacttacttattttagtactttaactaatg 32375337  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 46751081 - 46751133
Alignment:
Q  161 aacaataattacacaacttttttatgtaaacttacttattttaatactttaac 213  Q
    ||||||||||||||||||||||||  |||| |||||  |||||| ||||||||    
T  46751081 aacaataattacacaacttttttacataaatttactctttttaaaactttaac 46751133  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 50958695 - 50958619
Alignment:
Q  167 aattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||||||||||||||  || ||| |||||||||||  |||||||||||||||   |||| || | |||||||||||    
T  50958695 aattacacaactttttattgcaaaattacttattttggtactttaacaaatgttctaaggacattggttaacattct 50958619  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 54153928 - 54153856
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggca 229  Q
    ||||| |||| |||| || ||||||  ||| |||||||||||||||| ||||||||| |||| | ||||||||    
T  54153928 tcttatcaatgattaaaccacttttcgatgcaaacttacttattttagtactttaaccaatgccccaagggca 54153856  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 83592 - 83678
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    ||||| |||||||||||| ||||||| ||| ||||||||| |||||||||||| ||| |||    ||| ||||||| ||||||||||    
T  83592 tcttatcaataattacactactttttaatgcaaacttactaattttaatacttcaacgaatactccaaaggcactcattaacattct 83678  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 246574 - 246654
Alignment:
Q  163 caataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||||||||||| ||||||  ||| |||||||||||||||| ||||||||| |||| |  ||||||| | |||| ||||||    
T  246574 caataattacaccacttttcgatgcaaacttacttattttagtactttaactaatgccctaagggcaatggttagcattct 246654  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 7833581 - 7833673
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattctgcataa 249  Q
    ||||| |||||||||||  | ||||||||| ||||||| |||||||| ||||||||| ||| |   |||| ||||||||| |||||| |||||    
T  7833581 tcttagcaataattacatcatttttttatgcaaacttatttattttagtactttaaccaatattgtaaggacactcgttagcattctacataa 7833673  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 47357223 - 47357175
Alignment:
Q  161 aacaataattacacaacttttttatgtaaacttacttattttaatactt 209  Q
    ||||||||| |||  ||| ||||||||||||||||||||||||||||||    
T  47357223 aacaataatcacattactattttatgtaaacttacttattttaatactt 47357175  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 45411323 - 45411236
Alignment:
Q  156 atcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||| ||||||||||||| ||||||||  | |||| |||||||||||| ||||||||| ||  ||||||| ||| | |||| ||||||    
T  45411323 atctcaacaataattacataactttttgttataaagttacttattttagtactttaaccaacatctcaagagcattagttagcattct 45411236  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 40059052 - 40058990
Alignment:
Q  164 aataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagg 226  Q
    ||||||||||||||||||| || |||| ||||||  |||| ||||||| ||||||| ||||||    
T  40059052 aataattacacaactttttaatataaatttactttatttattactttagcaaatgtttcaagg 40058990  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 22680785 - 22680720
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctc 222  Q
    ||||| |||| ||||||| ||||||  ||| |||||||||||||| | ||||||||| ||||||||    
T  22680785 tcttagcaatcattacaccacttttcgatgcaaacttacttatttaagtactttaaccaatgtctc 22680720  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 23865866 - 23865911
Alignment:
Q  174 caacttttttatgtaaacttacttattttaatactttaacaaatgt 219  Q
    ||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  23865866 caacttttttatgcaaacctacttattttagtactttaataaatgt 23865911  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 31860338 - 31860410
Alignment:
Q  157 tcttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggca 229  Q
    ||||| |||||||||||| | ||||  ||| ||||||||| |||||| ||||||||| |||| ||||| ||||    
T  31860338 tcttatcaataattacaccatttttcgatgcaaacttactcattttagtactttaaccaatggctcaatggca 31860410  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 48983065 - 48983148
Alignment:
Q  159 ttaacaataattacacaacttttttatgtaaacttacttattttaatactttaacaaatgtctcaagggcactcgttaacattct 243  Q
    |||| |||||||||||| | |||| ||||||||||| | ||||||  | ||||||||||| ||||| | ||||| ||||||||||    
T  48983065 ttaagaataattacaca-cattttaatgtaaacttattaattttatcattttaacaaatgcctcaatgacactcattaacattct 48983148  T

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