View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_low_1 (Length: 621)
Name: NF18508_low_1
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 25 - 600
Target Start/End: Complemental strand, 37135687 - 37135112
Alignment:
| Q |
25 |
gacagtgtaataaacctgcgacaggaatttccactgcaaattcggtgtagcaaaaaacagacaacaaagcagagataccggagacagcatacgacaaaac |
124 |
Q |
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| T |
37135687 |
gacagtgtaataaacctgcgacaggaatttccactgcaaattcggtgtagcaaaaaacagacaacaaagcagagataccggagacagcatacgacaaaac |
37135588 |
T |
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| Q |
125 |
aacggcaggaccagcctcctcacgagcttcaagaccggtgagaacaaaaatgccggaaccgacaactgcaccgattccgaaccaaataagatcccaacca |
224 |
Q |
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| T |
37135587 |
aacggcaggaccagcctcctcacgagcttcaagaccggtgagaacaaaaatgccggaaccgacaactgcgccgattccgaaccaaataagatcccaacca |
37135488 |
T |
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| Q |
225 |
ttcagagttttcttcatttggtggctgcttctagctttcatctccacaatttccatgtaatcttttgatcgtgtaaacattctatctttcaacctgtatg |
324 |
Q |
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| T |
37135487 |
ttcagagttttcttcatttggtggctgcttctagctttcatctccacaatttccatgtaatcttttgatcgtgtaaacattctatctttcaacctgtatg |
37135388 |
T |
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| Q |
325 |
gtgttttcatgaatgcttttccataatcacctaaacttttgaatgaatcttctgggaaaaactcatttcttgctccactgttttctgttcccatgtcctg |
424 |
Q |
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| T |
37135387 |
gtgttttcatgaatgcttttccataatcacctaaacttttgaatgaatcttctgggaaaaactcatttcttgctccactgttttctgttcccatgtcctg |
37135288 |
T |
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| Q |
425 |
attcatataatttaatttgatcaatgcaacaacatgcaatgctgttgtaaaaatataatatagtttaaaccaatcttaagagtctataggggagaacaag |
524 |
Q |
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| T |
37135287 |
attcatataatttaatttgatcaatgcaacaacatgcaatgctgttgtaaaaatataatatagtttaaaccaatcttaagagtctataggggagaacaag |
37135188 |
T |
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| Q |
525 |
aattaatatgtgtatgtgctatgagagaatgtgtgtggaatctcttttgagagtgtgagattcttgtgtaatttat |
600 |
Q |
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| T |
37135187 |
aattaatatgtgtatgtgctatgagagaatgtgtgtggaatctattttgagagtgtgagattcttgtgtaatttat |
37135112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 10680392 - 10680327
Alignment:
| Q |
45 |
acaggaatttccactgcaaattcggtgtagcaaaaaacagacaacaaagcagagataccggagaca |
110 |
Q |
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| T |
10680392 |
acagggatttccacagcaaattcagtgtaacaaaaaacagacaacatagcagaaatgcccgagaca |
10680327 |
T |
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