View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_low_10 (Length: 303)
Name: NF18508_low_10
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 49271670 - 49271383
Alignment:
| Q |
1 |
ctgttggaacttttgtagataccgatggaactaaagttatggctgttggtgatggtattgaagaaccttactatgttagatttcagaaggcttccacttt |
100 |
Q |
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| T |
49271670 |
ctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaagaaccttactatgttagatttcagaaggcttccacttt |
49271571 |
T |
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| Q |
101 |
tgctcagagcaataatcaagatttgagcagtgtgtaactgtaannnnnnnnagaaattgtgtgcttagtagtgaagtgtgatgggtcataataaggattg |
200 |
Q |
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| T |
49271570 |
tgctcagagcaataatcaagatttgagcagtgtgtaactgt-agtttttttagaaattgtgtgcttagtagtgaagtgtgatgggtcataataaggattg |
49271472 |
T |
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| Q |
201 |
cggatccataataagccacaaaattgcacacaaacagagtacttttctctgttttaagatttgccactttctttttatcctcaaaggtg |
289 |
Q |
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| T |
49271471 |
cggatccataataagccacaaaattgcacacaaacggagtacttttctctgttttaagatttgccactttctttttatcctcaaaggtg |
49271383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 49277587 - 49277455
Alignment:
| Q |
1 |
ctgttggaacttttgtagataccgatggaactaaagttatggctgttggtgatggtattgaagaaccttactatgttagatttcagaaggcttccacttt |
100 |
Q |
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| T |
49277587 |
ctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaagaaccttattatgttagatttcagaaggcttccacttt |
49277488 |
T |
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| Q |
101 |
tgctcagagcaataatcaagatttgagcagtgt |
133 |
Q |
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| T |
49277487 |
tactcagaacaagaatcaagatttcagcggtgt |
49277455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 49269206 - 49269119
Alignment:
| Q |
17 |
agataccgatggaactaaagttatggctgttggtgatggtattga---agaaccttactatgttagatttcagaaggcttccactttt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| || |||||||||| |
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| T |
49269206 |
agataccgatggaactaaagttatggctgttggtgatggtaatgatcttgaaccttattatgttaggtttcagagggtttccactttt |
49269119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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