View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_low_12 (Length: 270)
Name: NF18508_low_12
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 30005394 - 30005598
Alignment:
| Q |
21 |
ctagatatacaaaccaaacacgtacaccatcggtttcaagataatatgagattaacttggagttctatatagtcttcaaccttgttacgtacttcagcca |
120 |
Q |
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| T |
30005394 |
ctagatatacaaaccaaacacgtacaccaccggtttcaagataatctgagattaacttggagttctatatagtcttcaaccttgttacgtacttcagcca |
30005493 |
T |
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| Q |
121 |
aaccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaactctactta |
220 |
Q |
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| T |
30005494 |
aaccaaagcattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaactctactta |
30005593 |
T |
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| Q |
221 |
catcc |
225 |
Q |
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||||| |
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| T |
30005594 |
catcc |
30005598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 30071597 - 30071386
Alignment:
| Q |
12 |
aatatctcactagatatacaaaccaaacacgtacaccatcggtttcaagataatatgagattaacttggagttctatatagtcttcaaccttgttacgta |
111 |
Q |
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| T |
30071597 |
aatatctcactagatatacaaaccaaacacgtacaccaccggcttcaagataataagagatcaacttgtagttgtata--gtcttcaaccttgttacgta |
30071500 |
T |
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| Q |
112 |
cttcagccaaaccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaa |
211 |
Q |
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| T |
30071499 |
cttcagccaaaccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaa |
30071400 |
T |
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| Q |
212 |
ctctacttacatcc |
225 |
Q |
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|||||||||||||| |
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| T |
30071399 |
ctctacttacatcc |
30071386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 30045740 - 30045558
Alignment:
| Q |
40 |
acgtacaccatcggtttcaagataatatgagattaacttggagttctatatagtctt------caaccttgttacgtacttcagccaaaccaaaccattc |
133 |
Q |
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| T |
30045740 |
acgtataccaccagtttcaagataatatgagatcaacttggagttctatatagtctttatcttcaaccttattacgtac--------aacccaaccattc |
30045649 |
T |
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| Q |
134 |
att-gtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaactctacttacat |
223 |
Q |
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| T |
30045648 |
atttgtagacatgtcttttgcagtaacaacaataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacat |
30045558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 29990268 - 29990444
Alignment:
| Q |
35 |
caaacacgtacaccatcggtttcaagataatatgagattaacttggagttctatatagtcttcaacct------tgttacgtacttcagccaaaccaaac |
128 |
Q |
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| T |
29990268 |
caaacacgtacatcacgagtttcaagataataagagatcaacttggagttctatatagtcttcaacttcaacattgttacgtac--------aaccaaac |
29990359 |
T |
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| Q |
129 |
cattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaact |
213 |
Q |
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| T |
29990360 |
cattcattgtagacatgtcttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaact |
29990444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 29999048 - 29999160
Alignment:
| Q |
110 |
tacttcagccaaaccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattca |
209 |
Q |
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| T |
29999048 |
tacttcagccaaaccaaatcattcattgtggtcatgtcttttgc---agcaacaactatgctctatttccttctcttcactttcatataccttttattca |
29999144 |
T |
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| Q |
210 |
aactctacttacatcc |
225 |
Q |
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|||||| ||||||||| |
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| T |
29999145 |
aactcttcttacatcc |
29999160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 29943509 - 29943594
Alignment:
| Q |
109 |
gtacttcagccaaaccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttca |
194 |
Q |
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| T |
29943509 |
gtacttgatccaaaccaaaccattcattgtagagatgtcttctgcagcaataacaacagtacttgctttccttatcttcactttca |
29943594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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