View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_low_4 (Length: 448)
Name: NF18508_low_4
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 36630491 - 36630921
Alignment:
| Q |
1 |
tgctaaaaaacacctataaagagtgtcttgtagcaaaaccgttttctttaatagtattataactccaaacaannnnnnnatatattactattagttgctt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36630491 |
tgctaaaaaacacctataaag-gtgtcttgtagcaaaacccttttctttaatagtattataactccaaacaatttttttatatattactattagttgctt |
36630589 |
T |
|
| Q |
101 |
gtcttgagaacgcccgactttgtgtggtttgtccttattgaaccagtaatttattgagataaagttgagtttggatctaaatatttggcccgacgaaatg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||| |
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| T |
36630590 |
gtcttgagaacgcccgactttgtgtgatttgtccttattgaacccgtaatttattaagataaagttgagtttggatctaaatatttggcccggcgtaatg |
36630689 |
T |
|
| Q |
201 |
ctaagatcgggtgagagacgcacttaacttggcctaacccgtcctttgtacatcgaaggtgcaagtgaggaattacgcctaattcatctttactattatc |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36630690 |
ctaagatcgggtgagagacacacttaacttggcctaacccgtcttttgtacatcgaaggtggaagtgaggaattacgcctaattcatctttactattatc |
36630789 |
T |
|
| Q |
301 |
cctctcaagagaatctgtcgtaaagttaacttttggcacaagagattacaaatctactaggagaaacaggtacctggatttacttctaatgtgatgtcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36630790 |
cctctcaagagaatctgtcgtaaagttaacttttggcacaagagattacaaatctactaggagaaacaggtacctggatttacttctaatgtgatgtcaa |
36630889 |
T |
|
| Q |
401 |
attcgagttcaatgagcagctatttgcaatat |
432 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36630890 |
attcgagttcaatgagcagctatttgcaatat |
36630921 |
T |
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