View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_low_5 (Length: 364)
Name: NF18508_low_5
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 6489537 - 6489889
Alignment:
| Q |
10 |
aagaatattagtgaattcttaaaagctaagtgatgtatnnnnnnnnntaggctagtcaaatatatagaaggtgaattcattcataaaggctgccgataca |
109 |
Q |
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| T |
6489537 |
aagaatattattgaattcttgaaagc-aagtgatgtataaaaaaaaataggctagtcaaatatataaaaggtgaattcattcataaaggctgccgataca |
6489635 |
T |
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| Q |
110 |
t---------------------aaacagaaccatgaccaaatatataacctttccactaaccctttggtttattcccattaacctattaactagaatagt |
188 |
Q |
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| T |
6489636 |
tgtacaatgttatagatatatgaaagagaaccatgaccaaatatataacctttccactaaccctttggtttattcccattaacctattaactagaataat |
6489735 |
T |
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| Q |
189 |
aactttccactaacttttccactaaacgttgttaactgccaccaccagtaataataacttcccatttccactaacnnnnnnncttgcttcaattttgtct |
288 |
Q |
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| T |
6489736 |
aactttccactaacttttccactaaacgttgttaactgccaccaccagtaataataacttcccatttccactaactttttttcttgcttcaattttgtct |
6489835 |
T |
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| Q |
289 |
ataataacaaatagcaaagataaattaagtttccatgagcatccaaaaatggtt |
342 |
Q |
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| T |
6489836 |
ataataacaaataacaaagataaattaagtttccatgagcatccaaaaatggtt |
6489889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 6480015 - 6479921
Alignment:
| Q |
10 |
aagaatattagtgaattcttaaaagctaagtgatgtatnnnnnnnnntaggctagtcaaatatatagaaggtgaattcattcataaaggctgccgat |
106 |
Q |
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| T |
6480015 |
aagaatattattgaattcttgaaagctaagtgatgtataaaaaaa--tagggtagttaaatatatagaagatgaattcattcataaaggctgccgat |
6479921 |
T |
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