View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18508_low_6 (Length: 360)

Name: NF18508_low_6
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18508_low_6
NF18508_low_6
[»] chr2 (1 HSPs)
chr2 (1-360)||(34330515-34330884)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 34330515 - 34330884
Alignment:
Q  1 gtaaaagaggacacttaaaatcaagtgatagagctgaaatgattataagctttggacaaataaaagaagacatgcaagagaaaagaaattgcaatttgat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34330515 gtaaaagaggacacttaaaatcaagtgatagagctcaaatgattataagctttggacaaataaaagaagacatgcaagagacaagaaattgcaatttgat 34330614  T
Q  101 tacaacctttgtaagtaagcaacaaaatggcttcgatgtttgaacataattggtgaagacattgaatccgtgaattaaacgccaattttcatctttgtat 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34330615 tacaacctttgtaagtaagcaacaaaatggctttgatgtttgaacataattggttaagacattgaatccgtgaattaaacgccaattttcatctttgtat 34330714  T
Q  201 atattatattgc----------ttccctagccactcttcttaggaatcatgaagcaagaacaacaccataataataatccaaataataatgtcctcatgg 290  Q
    ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34330715 atattatattgcttgtgaccttttccctagccactcttcttaggaatcatgaagcaagaacaacaccataataataatccaaataataatgtcctcatgg 34330814  T
Q  291 tcggtttctgattatctaagggaaaggaaaaaggactatcannnnnnncttacttgtaaaacatttggaa 360  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||    
T  34330815 tcggtttctgattatctaagggaaaggaaaaaggactatcatttttttcttacttgtaaaacacttggaa 34330884  T

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