View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18508_low_8 (Length: 333)
Name: NF18508_low_8
Description: NF18508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18508_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 48570295 - 48569961
Alignment:
| Q |
1 |
cttgataaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaat |
100 |
Q |
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| T |
48570295 |
cttgataaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcatcttgaaaactgaaagatgaaaaattggaattgaatttagcaccgaat |
48570196 |
T |
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| Q |
101 |
taagaagtacaattgtcccttcgaggctaatatgcttatttttccccatgaccacgagttcaatttctccgacatt----tgttccaacgtcttccacgt |
196 |
Q |
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| T |
48570195 |
taagaagtacagttgtcccttcgaggctaatatgcttattt--ccccatgaccacgagttcaatttctccgacattaatttgttccaacgtcttccatgt |
48570098 |
T |
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| Q |
197 |
ggcctctctacccggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaaggttacaatgcttatttcaagt |
296 |
Q |
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| T |
48570097 |
ggcctctctacccggatttgcccccaccagcaatcccaaatatttaaatggaagtctcccttcactaaaattcaaaaaggttacgatgcttatttcaagt |
48569998 |
T |
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| Q |
297 |
aaaatatttcgccaactaagattgagctagcgatagg |
333 |
Q |
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| T |
48569997 |
aaaatatttcgccaactaagattgagctagcgatagg |
48569961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 13853148 - 13853082
Alignment:
| Q |
209 |
cggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaag |
275 |
Q |
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| T |
13853148 |
cggattagcccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaag |
13853082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 4864511 - 4864593
Alignment:
| Q |
32 |
tcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaattaagaagtacaatt |
114 |
Q |
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| T |
4864511 |
tcttcaaaactttcaccggcattttgaaaaaggaaagatgaaagataggaatagaattcaaaatagaattaagaaggacaatt |
4864593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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