View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18509_high_5 (Length: 382)

Name: NF18509_high_5
Description: NF18509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18509_high_5
NF18509_high_5
[»] chr2 (4 HSPs)
chr2 (15-368)||(37965592-37965945)
chr2 (15-76)||(8761284-8761345)
chr2 (15-76)||(10128458-10128519)
chr2 (23-76)||(15140725-15140778)
[»] chr3 (2 HSPs)
chr3 (20-76)||(30046375-30046431)
chr3 (15-44)||(25579007-25579036)
[»] chr4 (5 HSPs)
chr4 (15-74)||(53472651-53472710)
chr4 (15-81)||(53469764-53469830)
chr4 (15-76)||(9010918-9010979)
chr4 (15-72)||(13816904-13816961)
chr4 (33-74)||(32015122-32015163)
[»] chr7 (5 HSPs)
chr7 (23-73)||(1103078-1103128)
chr7 (15-81)||(1345061-1345126)
chr7 (237-287)||(22559535-22559585)
chr7 (15-62)||(1103129-1103176)
chr7 (15-47)||(11269943-11269975)
[»] chr6 (4 HSPs)
chr6 (15-48)||(11677000-11677033)
chr6 (15-43)||(2921953-2921981)
chr6 (15-47)||(11678826-11678858)
chr6 (15-79)||(11681569-11681633)
[»] chr1 (2 HSPs)
chr1 (15-79)||(24272702-24272765)
chr1 (15-79)||(24284777-24284841)
[»] scaffold0007 (1 HSPs)
scaffold0007 (17-79)||(260473-260535)
[»] chr5 (1 HSPs)
chr5 (15-47)||(32795641-32795673)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 368
Target Start/End: Original strand, 37965592 - 37965945
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaatctttttcaacttaaccaaagattttgaattagaat 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37965592 atttcttcatattatccgatgtgagacattttcccaacactaattcaaggcatatttcaacaaatcttttccaacttaaccaaagattttgaattagaat 37965691  T
Q  115 ccaatcctcataatgtaccagttaaatatctttaagcagagaattgtcatccattgtggttttatccagctcaagaaattaatttctacaattataagct 214  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||     
T  37965692 ccaatcctcataatgtaccagttaaatatctttaagcagagttttgtcatccattgtggttttatccagctcaagaaattaatctctacaattgtaagca 37965791  T
Q  215 gagggtacttgctttacaccatatatactctctaacatcttaattgcaaagactaaattgacagattttatatacttgttttatttagatagtttagaaa 314  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37965792 gagggtacttgctttacaccatatatactctctaacatattaattgcatagactaaattgacagattttatatacttgttttatttagatagtttagaaa 37965891  T
Q  315 ctaaatacaagtatgacgatagttcaaaaattaaattgatggtttactcatatt 368  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37965892 ctaaatagaagtatgacgatagttcaaaaattaaattgatggtttactcatatt 37965945  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 8761284 - 8761345
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaaca 76  Q
    |||||||||||||||| |||||| ||||||||| |||||| |||||||| ||||||||||||    
T  8761284 atttcttcatattatctgatgtgggacattttcccaacacaaattcaagacatatttcaaca 8761345  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 10128519 - 10128458
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaaca 76  Q
    ||||||||||||| |||||||||  | |||||  ||||||||||||| | ||||||||||||    
T  10128519 atttcttcatattctccgatgtggaatatttttccaacactaattcaggacatatttcaaca 10128458  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15140778 - 15140725
Alignment:
Q  23 atattatccgatgtgagacattttcacaacactaattcaaggcatatttcaaca 76  Q
    |||||||  |||||| ||||||||  ||||||||||||||| ||||||||||||    
T  15140778 atattatttgatgtgggacatttttccaacactaattcaagacatatttcaaca 15140725  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 30046431 - 30046375
Alignment:
Q  20 ttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaaca 76  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  30046431 ttcatattatccgatatgagacattttcccaacattaattcaaggcatatttcaaca 30046375  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 25579007 - 25579036
Alignment:
Q  15 atttcttcatattatccgatgtgagacatt 44  Q
    ||||||||||||||||||||||||||||||    
T  25579007 atttcttcatattatccgatgtgagacatt 25579036  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 53472651 - 53472710
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaa 74  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  53472651 atttcttcgtattatccgatgtggaacattttcccaacactaattcaaggcatatttcaa 53472710  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 53469764 - 53469830
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaatct 81  Q
    |||||||||||||||| |||||   |||||||| ||||| ||||| |||||||||||||||||||||    
T  53469764 atttcttcatattatctgatgtagaacattttcccaacattaattaaaggcatatttcaacaaatct 53469830  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 9010918 - 9010979
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaaca 76  Q
    |||||||||||| |||||||||| ||||| |||  ||||||||||| |||||||||||||||    
T  9010918 atttcttcatatcatccgatgtgggacatattcctaacactaattccaggcatatttcaaca 9010979  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 13816961 - 13816904
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttc 72  Q
    ||||||||||||| | ||||||||||| ||||| ||||| |||||||| |||||||||    
T  13816961 atttcttcatattcttcgatgtgagactttttcccaacattaattcaatgcatatttc 13816904  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 32015163 - 32015122
Alignment:
Q  33 atgtgagacattttcacaacactaattcaaggcatatttcaa 74  Q
    ||||||||| |||| |||||||||||||||| ||||||||||    
T  32015163 atgtgagacttttttacaacactaattcaagacatatttcaa 32015122  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 1103128 - 1103078
Alignment:
Q  23 atattatccgatgtgagacattttcacaacactaattcaaggcatatttca 73  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  1103128 atattatcagatgtgagacattttcccaacactaattcaaggcatatttca 1103078  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 1345126 - 1345061
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaatct 81  Q
    |||||||| |||| | ||||||||||| |||||  |||||||||||||| |||||||||||||||||    
T  1345126 atttcttcttattcttcgatgtgagactttttct-aacactaattcaagacatatttcaacaaatct 1345061  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 22559535 - 22559585
Alignment:
Q  237 atatactctctaacatcttaattgcaaagactaaattgacagattttatat 287  Q
    ||||| |||||||||||||||| ||| ||||||||||||| ||||||||||    
T  22559535 atatagtctctaacatcttaatagcagagactaaattgaccgattttatat 22559585  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 1103176 - 1103129
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaa 62  Q
    ||||||||||||||||||||||| ||| ||||  ||||||||||||||    
T  1103176 atttcttcatattatccgatgtgggacgtttttccaacactaattcaa 1103129  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 11269975 - 11269943
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttc 47  Q
    ||||||||||||||||||||||| |||||||||    
T  11269975 atttcttcatattatccgatgtgggacattttc 11269943  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 11677033 - 11677000
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttca 48  Q
    ||||||||||||||||||||||||||||||||||    
T  11677033 atttcttcatattatccgatgtgagacattttca 11677000  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 2921953 - 2921981
Alignment:
Q  15 atttcttcatattatccgatgtgagacat 43  Q
    |||||||||||||||||||||||||||||    
T  2921953 atttcttcatattatccgatgtgagacat 2921981  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 11678858 - 11678826
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttc 47  Q
    ||||||||||||||||||||||| |||||||||    
T  11678858 atttcttcatattatccgatgtgggacattttc 11678826  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 11681569 - 11681633
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaat 79  Q
    ||||||||||||||| |||||  | ||||||||  |||||||||||||  |||||||||| ||||    
T  11681569 atttcttcatattattcgatgaaaaacattttcctaacactaattcaaatcatatttcaaaaaat 11681633  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 24272765 - 24272702
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaat 79  Q
    ||||||||||| | | ||||||||||  ||||| ||||||||||||||| |||||||||||||||    
T  24272765 atttcttcatactctacgatgtgagattttttc-caacactaattcaagacatatttcaacaaat 24272702  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 24284841 - 24284777
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaat 79  Q
    |||| |||||||| || |||||| ||| ||||| ||| | |||||||||||||||||||||||||    
T  24284841 atttgttcatattctctgatgtgggactttttcccaatattaattcaaggcatatttcaacaaat 24284777  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 260473 - 260535
Alignment:
Q  17 ttcttcatattatccgatgtgagacattttcacaacactaattcaaggcatatttcaacaaat 79  Q
    |||||| ||||| || ||||  ||||||||| ||||||||||||||  |||||||||||||||    
T  260473 ttcttcgtattaccctatgtaggacattttcccaacactaattcaaaacatatttcaacaaat 260535  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 32795641 - 32795673
Alignment:
Q  15 atttcttcatattatccgatgtgagacattttc 47  Q
    ||||||||||||||||||||||| |||||||||    
T  32795641 atttcttcatattatccgatgtgggacattttc 32795673  T

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