View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18509_low_1 (Length: 719)

Name: NF18509_low_1
Description: NF18509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18509_low_1
NF18509_low_1
[»] chr1 (6 HSPs)
chr1 (18-286)||(52550004-52550285)
chr1 (405-619)||(52549348-52549552)
chr1 (283-409)||(52549858-52549984)
chr1 (429-709)||(15594620-15594912)
chr1 (435-679)||(34467108-34467364)
chr1 (658-709)||(52549302-52549353)
[»] chr2 (22 HSPs)
chr2 (413-706)||(7541796-7542101)
chr2 (432-709)||(14702997-14703286)
chr2 (429-709)||(12258871-12259163)
chr2 (429-682)||(11998994-11999258)
chr2 (435-682)||(12245723-12245982)
chr2 (283-409)||(7541339-7541465)
chr2 (564-709)||(12234422-12234567)
chr2 (144-286)||(7541177-7541319)
chr2 (143-282)||(12246485-12246624)
chr2 (291-409)||(12259502-12259620)
chr2 (284-394)||(12234233-12234343)
chr2 (287-409)||(12246335-12246457)
chr2 (429-562)||(16662441-16662574)
chr2 (284-406)||(14702523-14702645)
chr2 (286-383)||(11998657-11998754)
chr2 (429-538)||(43624998-43625107)
chr2 (143-286)||(12234069-12234212)
chr2 (196-266)||(14702412-14702482)
chr2 (588-709)||(16662282-16662403)
chr2 (151-286)||(12259651-12259786)
chr2 (564-710)||(43625145-43625291)
chr2 (504-546)||(5446234-5446276)
[»] chr4 (5 HSPs)
chr4 (429-697)||(35132042-35132323)
chr4 (429-709)||(30774838-30775130)
chr4 (573-652)||(23588080-23588159)
chr4 (573-652)||(23596932-23597011)
chr4 (429-535)||(9336367-9336473)
[»] chr7 (33 HSPs)
chr7 (410-709)||(6789079-6789390)
chr7 (588-709)||(17267696-17267817)
chr7 (458-709)||(27831165-27831428)
chr7 (429-705)||(8545219-8545507)
chr7 (458-709)||(17259856-17260119)
chr7 (435-709)||(8575918-8576204)
chr7 (575-699)||(8601718-8601842)
chr7 (429-708)||(8581286-8581577)
chr7 (588-709)||(8570068-8570189)
chr7 (588-709)||(8616438-8616559)
chr7 (414-538)||(3146835-3146959)
chr7 (585-703)||(8383172-8383290)
chr7 (585-651)||(8590392-8590458)
chr7 (589-664)||(7878068-7878143)
chr7 (429-556)||(29578127-29578254)
chr7 (467-562)||(29582290-29582385)
chr7 (429-546)||(8590224-8590341)
chr7 (585-684)||(8537790-8537889)
chr7 (420-535)||(10494850-10494965)
chr7 (570-652)||(8102406-8102488)
chr7 (579-709)||(8585996-8586126)
chr7 (465-551)||(27846566-27846652)
chr7 (562-627)||(8636715-8636780)
chr7 (427-535)||(7878209-7878317)
chr7 (588-684)||(8609674-8609770)
chr7 (655-709)||(8659187-8659241)
chr7 (418-523)||(8558958-8559063)
chr7 (458-538)||(17267554-17267634)
chr7 (354-401)||(8646067-8646114)
chr7 (429-532)||(8667005-8667108)
chr7 (456-535)||(13333844-13333923)
chr7 (429-535)||(8658949-8659055)
chr7 (429-546)||(8569897-8570014)
[»] chr5 (2 HSPs)
chr5 (414-562)||(28219489-28219637)
chr5 (573-709)||(28219660-28219796)
[»] chr8 (2 HSPs)
chr8 (429-705)||(12528090-12528378)
chr8 (429-709)||(43744402-43744694)
[»] chr3 (1 HSPs)
chr3 (28-70)||(50672316-50672358)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 52550285 - 52550004
Alignment:
Q  18 tctgcatcatatggtttcagcacactgttgttggaatggtttagataacatgtctctaccagaaaattattagacttaatgcatactaaacaaaaagaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550285 tctgcatcatatggtttcagcacactgttgttggaatggtttagataacatgtctctaccagaaaattattagacttaatgcatactaaacaaaaagaca 52550186  T
Q  118 acacttaaaaccttaact-------------aataaagaactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttc 204  Q
    ||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550185 acacttaaaaccttaactgagaaaaaacaaaaataaagaactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttc 52550086  T
Q  205 cagaacatctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550085 cagaacatctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatt 52550004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 405 - 619
Target Start/End: Complemental strand, 52549552 - 52549348
Alignment:
Q  405 attaaatttcctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcct 504  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549552 attaaatttcctatcacttcaatgacaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcct 52549453  T
Q  505 gaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttgtcctgtaacagttgttgtacattgggaatcctagaagaccc 604  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||| ||||||||||||    
T  52549452 gaacagctgcgccataagctacaacctcatcaggattaatgcccttgcacaactccttgtcct----------ttgtacattgggaaacctagaagaccc 52549363  T
Q  605 accaacaaggacaac 619  Q
    |||||||||||||||    
T  52549362 accaacaaggacaac 52549348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 283 - 409
Target Start/End: Complemental strand, 52549984 - 52549858
Alignment:
Q  283 aattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaat 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52549984 aattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaatgcattccatggtttagccttccttaggaatttcttgtcttcaat 52549885  T
Q  383 acagtaattctcagcttcttgaattaa 409  Q
    |||||||||||||||||||||||||||    
T  52549884 acagtaattctcagcttcttgaattaa 52549858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 429 - 709
Target Start/End: Original strand, 15594620 - 15594912
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    |||||||||||||||| |||||| || | |||||| ||||||||||| | ||  |||||||||||||| |||||||| |||||||| |||||||| |||     
T  15594620 ccaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacag 15594719  T
Q  529 cctcatcaggattaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||| || |||| | ||||||| |||||             ||||  || |||||||| || |||||||||||||||||||||||||||| |||    
T  15594720 cctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccaccaacaatgac 15594819  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    || ||||| ||| || ||||| | |||||||||||||  ||||||||| ||||| ||||||||||| |||||||||| |||||| || |||||    
T  15594820 aatatcatttacactactcttattcatcttagcatcatcaagacaactctcaactatcttcatacaatccttaaaaaagtccatgttgatttc 15594912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 679
Target Start/End: Complemental strand, 34467364 - 34467108
Alignment:
Q  435 gacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcat 534  Q
    ||||| |||||||||||  |||||||||| ||||||||||| | || ||||| ||||||||| ||||| || ||||||||| ||||||| ||| ||||||    
T  34467364 gacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcat 34467265  T
Q  535 caggattaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatc 622  Q
    |||| || ||||  ||||| |  |||||            |||| | || || || || || ||||||||||||||||| || || ||||||||| ||||    
T  34467264 cagggttgatgctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggacagcatc 34467165  T
Q  623 atctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcat 679  Q
    ||  || || ||| |||||||||||||||||| |||||||||  |||||||| ||||    
T  34467164 atgcacactactcgtgtccatcttagcatcaacaagacaactcacaacaatcctcat 34467108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 658 - 709
Target Start/End: Complemental strand, 52549353 - 52549302
Alignment:
Q  658 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52549353 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 52549302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 413 - 706
Target Start/End: Original strand, 7541796 - 7542101
Alignment:
Q  413 tcctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagct 512  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||| || |||| ||||||||||||||||||||||||||    
T  7541796 tcctatcactcccctgccaagagacaaaggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagct 7541895  T
Q  513 gcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaag 600  Q
    || |||||||| ||| |||||||||||||||||| ||||||||| |||||            ||||| ||| || || |||||  |||||||||| ||||    
T  7541896 gccccataagcaacagcctcatcaggattaatgctcttgcacaagtcctttccattgaaaaagtcctttaatagctgatgtactatgggaatcctcgaag 7541995  T
Q  601 acccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccat 700  Q
    |||| || ||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||| |||||||| |||||    
T  7541996 acccgccgacaaggacaacatcatctatcatgctcttgtccatattagcatcaataagacagcttccaacaatcgtcatacactcgttaaaaagatccat 7542095  T
Q  701 attcat 706  Q
    ||||||    
T  7542096 attcat 7542101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 432 - 709
Target Start/End: Original strand, 14702997 - 14703286
Alignment:
Q  432 agagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacct 531  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||||  | | ||||||||||||| ||||||||||||||||| |||||||| ||| | |    
T  14702997 agagacaaaggtgtaatatcctgaagcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagctt 14703096  T
Q  532 catcaggattaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaac 619  Q
    ||||||| |||||||  ||||||||||||||            ||||||||| | ||| ||||| |||||||||| |||||||||||| ||||| |||||    
T  14703097 catcagggttaatgctgttgcacaactccttcccctggaaaaagtcctgtaataattgctgtactttgggaatccgagaagacccaccgacaagaacaac 14703196  T
Q  620 atcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||    
T  14703197 atcatctactctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttc 14703286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 429 - 709
Target Start/End: Complemental strand, 12259163 - 12258871
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||| ||||| |||||||||| ||| || ||| |||| |||     
T  12259163 ccaagagacaaaggtgtaacatcctgcagctccaactttggaacattctggatatcttcacttaacaaagcagcctgaatagccgccccaaaagctacag 12259064  T
Q  529 cctcatcaggattaatgcccttgcacaact------ccttg------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||||||||||| |||||||||||      |||||      |||||||| || || || || ||| ||||||||||||||||||| ||||||||    
T  12259063 cctcatcaggattaatgctcttgcacaactctttccccttgaaaaaatcctgtaatagctgctgcactttgagaatcctagaagacccacctacaaggac 12258964  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    ||||||||||||  | ||||||||| | ||||||||  |||||||||| |||||| ||||||| || || || ||||| |||| ||| |||||    
T  12258963 aacatcatctacattactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttc 12258871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 429 - 682
Target Start/End: Original strand, 11998994 - 11999258
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||||| ||   ||||||||||||| ||||| ||||||||||| |||||||| |||     
T  11998994 ccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacag 11999093  T
Q  529 cctcatcaggattaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||| ||||||| |||||||||||||||            ||| ||||| || ||||| || ||||| ||||||||||| ||||||||||| ||    
T  11999094 cctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggactttggg-atcctagaagatccaccaacaagtac 11999192  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcataca 682  Q
    |||||||||||   | |||||||||||||| ||||| |||| |||||| |||||| |||| |||||    
T  11999193 aacatcatctatagtactcttgtccatctttgcatccataatacaactctcaacagtctttataca 11999258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 435 - 682
Target Start/End: Complemental strand, 12245982 - 12245723
Alignment:
Q  435 gacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcat 534  Q
    |||||||| ||||||||||||| |||||| ||||||||||||| ||   ||| ||||||||| ||||| ||||||||||| |||||||| ||| |||| |    
T  12245982 gacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgt 12245883  T
Q  535 caggattaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatc 622  Q
    |||| ||||||| ||||||||| |||||            ||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||| |||    
T  12245882 cagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgggaatcctagaagatccaccaacaagtacaaaatc 12245783  T
Q  623 atctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcataca 682  Q
    |||||   | |||||||||||||| ||||| |||| |||||| |||||| |||| |||||    
T  12245782 atctatagtactcttgtccatctttgcatccataatacaactctcaacagtctttataca 12245723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 283 - 409
Target Start/End: Original strand, 7541339 - 7541465
Alignment:
Q  283 aattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaat 382  Q
    |||||||||| | ||||||||||||| |||  |||||||||||||||||||||||  |||||  || ||| |||||||||||||||||||||||||||||    
T  7541339 aattaatatcatttttctttaaagcagttcccattttgtaaatgtagtcatccaatacattcactgctttggccttccttaggaatttcttgtcttcaat 7541438  T
Q  383 acagtaattctcagcttcttgaattaa 409  Q
    || ||| ||||||||||||||||||||    
T  7541439 acggtatttctcagcttcttgaattaa 7541465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 564 - 709
Target Start/End: Original strand, 12234422 - 12234567
Alignment:
Q  564 tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaac 663  Q
    ||||| || ||||| || || |||||||||||||| ||||| |||| ||||||||| ||||| ||||| || |||||||||||||||||| |||||||||    
T  12234422 tcctgcaatagttgctgcactttgggaatcctagaggacccgccaataaggacaacttcatccaccctacttttgtccatcttagcatcactaagacaac 12234521  T
Q  664 tttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    | ||||||||||||||||||||  ||| ||| ||||||||||||||    
T  12234522 tctcaacaatcttcatacactcaataagaagatccatattcatttc 12234567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 7541177 - 7541319
Alignment:
Q  144 actaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaac 243  Q
    ||||| |||||||||||||||| | || ||||||||||| |||  ||| ||||||||| ||||||||||||||||||||||| ||||| |||| |||||     
T  7541177 actaaatagtcttagctataatgtattccatccaactcttaagcccctctacatgatcctccagaacatctatttcaacttgttggttattctcatcaat 7541276  T
Q  244 caaattcgtggccactgcaattgcagattcgatcttctcaatt 286  Q
    |||||||||||||   ||||||| |||||| ||||||||||||    
T  7541277 caaattcgtggccttagcaattgtagattcaatcttctcaatt 7541319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 12246624 - 12246485
Alignment:
Q  143 aactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaa 242  Q
    |||||| ||||||| ||||||||||||| ||| | ||||| ||   |||||| || ||| |||| ||||||||||||||| ||||||||||||| |||||    
T  12246624 aactaattagtcttggctataatctgttccattctactctcaatcccctttagataatcctccaaaacatctatttcaacctgctggtttttctcatcaa 12246525  T
Q  243 ccaaattcgtggccactgcaattgcagattcgatcttctc 282  Q
     |||||| |||||||| |||||||||||||||||||||||    
T  12246524 gcaaatttgtggccacagcaattgcagattcgatcttctc 12246485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 291 - 409
Target Start/End: Complemental strand, 12259620 - 12259502
Alignment:
Q  291 tcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaatacagtaat 390  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||  || |||||  ||| |||||||||||||||| | |||||||||||    
T  12259620 tcctcattctttaaagcatttctcattttgtaaatgtaatcatccaatgcattcactgctttagatttctttaggaatttcttgtcgtaaatacagtaat 12259521  T
Q  391 tctcagcttcttgaattaa 409  Q
    ||||||||||||| |||||    
T  12259520 tctcagcttcttgtattaa 12259502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 284 - 394
Target Start/End: Original strand, 12234233 - 12234343
Alignment:
Q  284 attaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaata 383  Q
    ||||||||||   ||||| ||||||||||| |||||||||||||||  |||||| ||||||  || ||||||||||||||||||||||||||||||||||    
T  12234233 attaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcattcactgctttagccttccttaggaatttcttgtcttcaata 12234332  T
Q  384 cagtaattctc 394  Q
      |||||||||    
T  12234333 tggtaattctc 12234343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 287 - 409
Target Start/End: Complemental strand, 12246457 - 12246335
Alignment:
Q  287 aatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaatacag 386  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||  || ||| ||||||||||||||| ||| ||||||||||       
T  12246457 aatatcctttttctttaaagcatttcccattttgtaaatgtagtcatccaaagcattcactgctttggccttccttaggaatctctggtcttcaatatga 12246358  T
Q  387 taattctcagcttcttgaattaa 409  Q
     |||||||||| |||| ||||||    
T  12246357 aaattctcagcctctttaattaa 12246335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 429 - 562
Target Start/End: Complemental strand, 16662574 - 16662441
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| ||||| || ||||| ||  |||||||||| |||||||||| || |||||||||||||||||  ||||| || |||||||| |||||||| |||     
T  16662574 ccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacag 16662475  T
Q  529 cctcatcaggattaatgcccttgcacaactcctt 562  Q
    |||||||||| || |||| |||||||||||||||    
T  16662474 cctcatcagggttgatgctcttgcacaactcctt 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 14702523 - 14702645
Alignment:
Q  284 attaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaata 383  Q
    ||||||||||| |||||| ||||| ||||| |||||||||||| ||| ||||||  |||||     ||| |||||||||||||||||| |||||||||||    
T  14702523 attaatatcctttttcttcaaagcgtttctcattttgtaaatgaagtaatccaattcattcaccactttggccttccttaggaatttcatgtcttcaata 14702622  T
Q  384 cagtaattctcagcttcttgaat 406  Q
      |||||||||||||||||||||    
T  14702623 tggtaattctcagcttcttgaat 14702645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 11998657 - 11998754
Alignment:
Q  286 taatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaata 383  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||||||||| ||||||   | ||  ||||||||||||||||||||||||||||||    
T  11998657 taatatcctttgactttaaagcatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaata 11998754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 429 - 538
Target Start/End: Original strand, 43624998 - 43625107
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| |||||||| ||||||||  |||||||||| ||||||||||||| |||||||| |||||| |  |||||||| |||||||| |||||||| |||     
T  43624998 ccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacag 43625097  T
Q  529 cctcatcagg 538  Q
    ||||||||||    
T  43625098 cctcatcagg 43625107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 12234069 - 12234212
Alignment:
Q  143 aactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaa 242  Q
    |||||| || ||||||||||||| |||| ||| | ||||| |||  | || | |||||| || |||||||||||||||||||||||||| |||| |||||    
T  12234069 aactaaataatcttagctataatgtgttccatgctactctcaagccctttcagatgatcctcaagaacatctatttcaacttgctggttattctcatcaa 12234168  T
Q  243 ccaaattcgtggccactgcaattgcagattcgatcttctcaatt 286  Q
    ||||||| |||||   ||||||  ||||||| ||||||||||||    
T  12234169 ccaaatttgtggcagttgcaatcacagattcaatcttctcaatt 12234212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 14702412 - 14702482
Alignment:
Q  196 atgatcttccagaacatctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattg 266  Q
    |||||| |||||||||||||||||||| |||||||| |||| ||||| |||||| |||||||| |||||||    
T  14702412 atgatcctccagaacatctatttcaacctgctggttattctcatcaatcaaatttgtggccacagcaattg 14702482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 709
Target Start/End: Complemental strand, 16662403 - 16662282
Alignment:
Q  588 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 687  Q
    ||||||||||| || || || ||||| |||| ||||| ||| |  | |||||||||||| | ||| | || |||||| |||||||||||||||||||| |    
T  16662403 ggaatcctagacgagcccccgacaagaacaatatcatgtacaccccccttgtccatctttgaatccacaaaacaactctcaacaatcttcatacactcgt 16662304  T
Q  688 taaaaaggtccatattcatttc 709  Q
    |||||||| ||||||| |||||    
T  16662303 taaaaaggcccatattgatttc 16662282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 12259786 - 12259651
Alignment:
Q  151 agtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaaccaaattc 250  Q
    |||||| |||||||| |||| ||||| ||||| |||  |||||| || ||| || ||||| ||   ||| |  |||||||| |||| |  || ||||||     
T  12259786 agtcttggctataatttgttccatcctactctcaagcccctttagataatcctcaagaacctcagcttcgagctgctggttattctcactaagcaaattt 12259687  T
Q  251 gtggccactgcaattgcagattcgatcttctcaatt 286  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12259686 gtggccactgcaattgcagattcaatcttctcaatt 12259651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 710
Target Start/End: Original strand, 43625145 - 43625291
Alignment:
Q  564 tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaac 663  Q
    ||||| ||||| |||| ||| || ||||| ||||| || || ||||||||||||||||| |  |     |||||||||| ||| ||||||||||||||||    
T  43625145 tcctgcaacagctgttttacttttggaattctagaggagccgccaacaaggacaacatcgtggatagcactcttgtccaacttggcatcaataagacaac 43625244  T
Q  664 tttcaacaatcttcatacactccttaaaaaggtccatattcatttca 710  Q
    | | |||| | |||| |||||| || ||||| |||||||| ||||||    
T  43625245 tcttaacagttttcaaacactcgttgaaaagatccatatttatttca 43625291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 504 - 546
Target Start/End: Complemental strand, 5446276 - 5446234
Alignment:
Q  504 tgaacagctgcgccataagccacaacctcatcaggattaatgc 546  Q
    |||||||| ||||||||||||||| | ||||||||||||||||    
T  5446276 tgaacagcggcgccataagccacagcttcatcaggattaatgc 5446234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 429 - 697
Target Start/End: Original strand, 35132042 - 35132323
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    |||||||||||||||||||||||||| | |||||||||||||||||| |  ||||||| ||||||||| ||||||||||| ||||| |||||||| |||     
T  35132042 ccaagagacaaaggtgtaacatcctgtaacaccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctacag 35132141  T
Q  529 cctcatcaggattaatgcccttgcacaactcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    ||||||| || ||||||| |||||||||||||||            ||  || || || || || || |||||||||||||||||||| |||||||| ||    
T  35132142 cctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagaccctccaacaagaac 35132241  T
Q  617 aacatcatctaccc-tgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtc 697  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||| || ||  | ||||||||||| |||||||||||    
T  35132242 aacatcatctacccttgctcttgtccatcttagcatcaatgagacaactctctacggtattcatacactcattaaaaaggtc 35132323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 709
Target Start/End: Original strand, 30774838 - 30775130
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| |||||||| || |||||  ||||||||||||||||  |||||| ||||||||||||||| |  |||||||| |||||||| || | ||| ||      
T  30774838 ccaagtgacaaaggggtgacatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactg 30774937  T
Q  529 cctcatcaggattaatgcccttgcacaactccttgtcct------------gtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    ||||||||||||| |||| ||||||||| |||||  | |            | || ||||  || || ||||||||||||||||| ||||| ||||| ||    
T  30774938 cctcatcaggattgatgctcttgcacaaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccgacaagaac 30775037  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    || ||||||||| || |||||||| | ||| | |||| |||||||||| |||||| |||  |||||||| ||||||||||||||||| |||||    
T  30775038 aatatcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttc 30775130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 652
Target Start/End: Complemental strand, 23588159 - 23588080
Alignment:
Q  573 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 652  Q
    |||||||| || |||||||||||||  || ||||||||||| ||||||||||  || ||| |||| ||||||||||||||    
T  23588159 agttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatcatggacactgttcttatccatcttagcatc 23588080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 652
Target Start/End: Complemental strand, 23597011 - 23596932
Alignment:
Q  573 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 652  Q
    |||||||| || |||||||||||||  || || |||||||| ||||||||||| || ||| |||| ||||||||||||||    
T  23597011 agttgttgaaccttgggaatcctagtcgatccgccaacaagaacaacatcatcaacactgttcttatccatcttagcatc 23596932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 535
Target Start/End: Complemental strand, 9336473 - 9336367
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| ||||| || ||||||||  | |||||||| || ||  |||||| || |||||||||||| |  ||||| ||||||||||| |||||||| |||     
T  9336473 ccaagtgacaatggggtaacatctcgtagcaccaagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaacag 9336374  T
Q  529 cctcatc 535  Q
    |||||||    
T  9336373 cctcatc 9336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 410 - 709
Target Start/End: Original strand, 6789079 - 6789390
Alignment:
Q  410 atttcctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaaca 509  Q
    ||||||||| ||| || | ||||||||||| ||||||||||| ||||||||||| ||||||||| ||| |  |||||| |||||||| |||||||| |||    
T  6789079 atttcctattactgccttaccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggaca 6789178  T
Q  510 gctgcgccataagccacaacctcatcaggattaatgcccttgcacaactccttgtcc------------tgtaacagttgttgtacattgggaatcctag 597  Q
    ||||| || ||||| ||| |||||||||| || |||| | ||||||| |||||  ||            || || |||||||| || |||||||| ||||    
T  6789179 gctgcaccgtaagcaacagcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattctag 6789278  T
Q  598 aagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtc 697  Q
    ||||||||||||||||||||||||||| |||  | ||||||||||||||||| |||| ||||||||| |||||  ||||||||||||| |||||||  ||    
T  6789279 aagacccaccaacaaggacaacatcatttacaatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatc 6789378  T
Q  698 catattcatttc 709  Q
    |||||| |||||    
T  6789379 catattgatttc 6789390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 588 - 709
Target Start/End: Original strand, 17267696 - 17267817
Alignment:
Q  588 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 687  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||  | |||||||||| ||| ||||| |    
T  17267696 ggaatcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcactcat 17267795  T
Q  688 taaaaaggtccatattcatttc 709  Q
     ||||||||||||||| |||||    
T  17267796 caaaaaggtccatattgatttc 17267817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 458 - 709
Target Start/End: Complemental strand, 27831428 - 27831165
Alignment:
Q  458 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac 557  Q
    |||||| ||||||||||||  |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| ||||||||||||| |||| |||||||||     
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa 27831329  T
Q  558 tcctt------------gtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatct 645  Q
    |||||            ||||   || || || || || ||||||||||| ||||| |||||||||||||||||||||||||  || |||||||||||||    
T  27831328 tcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaacatcatctatactactcttgtccatct 27831229  T
Q  646 tagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    |||  ||| | |||||||| |||||| ||| |||||| || || |||||||||||||| |||||    
T  27831228 tagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttc 27831165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 429 - 705
Target Start/End: Original strand, 8545219 - 8545507
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| |||||||| ||||||||  | |||||||  ||||| ||||||| | || ||||||||| ||| |||||||| |||||||| |||||||| |||     
T  8545219 ccaagtgacaaaggggtaacatctcgtagcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacag 8545318  T
Q  529 cctcatcaggattaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||| ||||||| |||||| || |||||             |||||||| || |||   || || |||||||||||||| || |||||||||||    
T  8545319 cctcatcagggttaatgctcttgcataattccttccccttaaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccgccaacaaggac 8545418  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattca 705  Q
    |||||||||||| || | |||||||||||||||||||| ||||||||  | |||| | | ||||||||  | ||| |||||||||||||    
T  8545419 aacatcatctacactacccttgtccatcttagcatcaacaagacaacaattaacagtgtccatacacttttcaaagaggtccatattca 8545507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 709
Target Start/End: Original strand, 17259856 - 17260119
Alignment:
Q  458 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaac 557  Q
    |||||| |||||||||||||  | || | |||| ||||| |||||||||||||| || |||||||| ||| |||||||||| || |||| |||||| ||     
T  17259856 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataat 17259955  T
Q  558 tccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatct 645  Q
    |||||             ||||| || ||||| || || || |||||||||||||| ||||||||||||||||||||||| |  ||||||||||| ||||    
T  17259956 tccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatct 17260055  T
Q  646 tagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    || ||||| |||||||  | |||||||||| ||| ||||| | ||||||||||||||| |||||    
T  17260056 taccatcactaagacacttctcaacaatctccatgcactcataaaaaaggtccatattgatttc 17260119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 435 - 709
Target Start/End: Original strand, 8575918 - 8576204
Alignment:
Q  435 gacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcat 534  Q
    ||||| |||||||||||  | | |||||| ||||||||||||| | |||||||||||||||| ||||| || ||| | || |||||||| ||| ||||||    
T  8575918 gacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagcctcat 8576017  T
Q  535 caggattaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatc 622  Q
    |||| || |||| ||| || || |||||             |||||||| || |||   || || |||||||||||||| ||||||||||||||||||||    
T  8576018 cagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggacaacatc 8576117  T
Q  623 atctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    |||||| ||  ||||||||||||||||||||  ||||||| | | |||| | ||||||||||  | ||| |||| ||||||||||||    
T  8576118 atctacactattcttgtccatcttagcatcagcaagacaaatattaacagtattcatacacttttcaaagaggttcatattcatttc 8576204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 575 - 699
Target Start/End: Original strand, 8601718 - 8601842
Alignment:
Q  575 ttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatc 674  Q
    |||||| || ||||||||||||||||| || |||||||||||| ||||||| || || ||||| || |||| ||||||| ||||||||||||||||| ||    
T  8601718 ttgttgcactttgggaatcctagaagaaccgccaacaaggacagcatcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtc 8601817  T
Q  675 ttcatacactccttaaaaaggtcca 699  Q
    |  ||||||| |||||| |||||||    
T  8601818 tctatacacttcttaaagaggtcca 8601842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 429 - 708
Target Start/End: Original strand, 8581286 - 8581577
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| ||||| |||||||||||  |||  | ||| ||||||||| ||| |||||||||||| | ||| |||||||||| ||| || |||||||| |||     
T  8581286 ccaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacag 8581385  T
Q  529 cctcatcaggattaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||| || |||| |||||| || |||||             |||||||| || |||   || || |||||||||||||| ||||||||||||||    
T  8581386 cctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggac 8581485  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcattt 708  Q
    |||||||||||| || | | ||||||||||||||||   ||||||||| | |||| | | ||||||||  | ||| |||| |||||||||||    
T  8581486 aacatcatctacactacccctgtccatcttagcatcggcaagacaactattaacagtgtccatacacttttcaaagaggttcatattcattt 8581577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 588 - 709
Target Start/End: Original strand, 8570068 - 8570189
Alignment:
Q  588 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 687  Q
    |||||||||||||| |||||||||||||||||||||||||| ||  |||| |||||||||||||||  ||||||||| | |||| | | ||||||||  |    
T  8570068 ggaatcctagaagaaccaccaacaaggacaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacactttt 8570167  T
Q  688 taaaaaggtccatattcatttc 709  Q
     ||| |||| ||||||||||||    
T  8570168 caaagaggttcatattcatttc 8570189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 588 - 709
Target Start/End: Original strand, 8616438 - 8616559
Alignment:
Q  588 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactcct 687  Q
    ||||||||||| || ||||| ||||| |||| ||||||||| || ||||| || ||||||| |||| ||| |||||| |||||| |||| |||||||| |    
T  8616438 ggaatcctagacgagccaccgacaagaacaatatcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgt 8616537  T
Q  688 taaaaaggtccatattcatttc 709  Q
    |||||||||||||||| |||||    
T  8616538 taaaaaggtccatattgatttc 8616559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 414 - 538
Target Start/End: Original strand, 3146835 - 3146959
Alignment:
Q  414 cctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctg 513  Q
    ||||| ||||| || |||||||||||||| | |||||| |||| |||||| ||||||||||| | || | ||||||||||||| ||||| || |||||||    
T  3146835 cctataacttcgataccaagagacaaaggagcaacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctg 3146934  T
Q  514 cgccataagccacaacctcatcagg 538  Q
    | |||||||| ||  ||||||||||    
T  3146935 caccataagcaacggcctcatcagg 3146959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 703
Target Start/End: Complemental strand, 8383290 - 8383172
Alignment:
Q  585 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 684  Q
    ||||||||||| ||||| ||||| |  || |||||||||||||| || ||||||| ||||||||||||| ||||||| || |||||| ||| ||||||||    
T  8383290 ttgggaatcctcgaagaaccaccgatgagaacaacatcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacact 8383191  T
Q  685 ccttaaaaaggtccatatt 703  Q
      | ||| |||||||||||    
T  8383190 tttcaaataggtccatatt 8383172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 651
Target Start/End: Original strand, 8590392 - 8590458
Alignment:
Q  585 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcat 651  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  8590392 ttgggaatcctagaagaaccaccaacaagtacaacatcatctacaatgttcttgtccatcttagcat 8590458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 589 - 664
Target Start/End: Complemental strand, 7878143 - 7878068
Alignment:
Q  589 gaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaact 664  Q
    |||||||||| || ||||||||||| ||||||||||||||  || ||||||||||| |||||||| ||||||||||    
T  7878143 gaatcctagatgatccaccaacaagtacaacatcatctacattgttcttgtccatcatagcatcagtaagacaact 7878068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 556
Target Start/End: Complemental strand, 29578254 - 29578127
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| ||||| ||||||| |||  |||  ||||| ||||||||||||| |||||| ||| ||||||| |||||||| |||||||| |||||||| |||     
T  29578254 ccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag 29578155  T
Q  529 cctcatcaggattaatgcccttgcacaa 556  Q
    |||| ||||| || |||| | |||||||    
T  29578154 cctcgtcagggtttatgctcatgcacaa 29578127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 29582385 - 29582290
Alignment:
Q  467 tggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttgcacaactcctt 562  Q
    ||||||||||| |||||||||| ||| ||| |||||||| |||||||| |||||||| ||| |||||||||| || |||| | ||||||| |||||    
T  29582385 tggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatcctt 29582290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 429 - 546
Target Start/End: Original strand, 8590224 - 8590341
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||||||||| || |||||||| || |||||||| || |||||||||| ||| || ||||  | ||| ||||| ||||||||||| |||||||| |||     
T  8590224 ccaagagacaatggagtaacatcttgtagcaccaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacag 8590323  T
Q  529 cctcatcaggattaatgc 546  Q
    ||||||| ||||| ||||    
T  8590324 cctcatctggattgatgc 8590341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 585 - 684
Target Start/End: Original strand, 8537790 - 8537889
Alignment:
Q  585 ttgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 684  Q
    ||||||||||||||||| |||||||| || ||||||||||| |  || ||  ||||||||||||||||| ||| |||||| | |||| | ||||||||||    
T  8537790 ttgggaatcctagaagagccaccaactagtacaacatcatccatactactactgtccatcttagcatcattaaaacaactcttaacagttttcatacact 8537889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 420 - 535
Target Start/End: Complemental strand, 10494965 - 10494850
Alignment:
Q  420 acttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccat 519  Q
    ||||| || ||||| ||||| || ||||||||  | |||||||| || || ||||||| || |||||||||||| |  ||||||||||||||||| ||||    
T  10494965 acttcaataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccat 10494866  T
Q  520 aagccacaacctcatc 535  Q
    |||| ||| |||||||    
T  10494865 aagcaacagcctcatc 10494850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 652
Target Start/End: Original strand, 8102406 - 8102488
Alignment:
Q  570 aacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatc 652  Q
    |||||||| || || |||||||||||||  || ||||||||||| ||||||||||  ||  ||||||||||||||||||||||    
T  8102406 aacagttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcatgaactgtgctcttgtccatcttagcatc 8102488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 709
Target Start/End: Complemental strand, 8586126 - 8585996
Alignment:
Q  579 tgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttca 678  Q
    ||||| |||||||| || || || ||||| |||||||||| ||| ||||| |   |||| || ||||||| |||  |||||||||| |||||| | || |    
T  8586126 tgtactttgggaattctggacgagccaccgacaaggacaatatcgtctacaccattcttctctatcttagaatcggtaagacaactctcaacagtattta 8586027  T
Q  679 tacactccttaaaaaggtccatattcatttc 709  Q
    ||||||| ||||||||||||||||| |||||    
T  8586026 tacactcattaaaaaggtccatattgatttc 8585996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 551
Target Start/End: Complemental strand, 27846652 - 27846566
Alignment:
Q  465 tttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcaggattaatgcccttg 551  Q
    ||||||||||||| |||| | ||||||||||| |||||||| |||||||| ||| |||| ||| |||||||||| || |||| ||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgctcttg 27846566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 562 - 627
Target Start/End: Complemental strand, 8636780 - 8636715
Alignment:
Q  562 tgtcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatcta 627  Q
    |||||||||| ||||| || || || ||||||||||| || |||||||||||||||||||||||||    
T  8636780 tgtcctgtaatagttgctgcacctttggaatcctagaggagccaccaacaaggacaacatcatcta 8636715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 535
Target Start/End: Complemental strand, 7878317 - 7878209
Alignment:
Q  427 tgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccac 526  Q
    ||||||||||||| || |||||||| |||| |||||| || |||||||||| ||| || ||||  | ||  ||||||||||||||||| |||||||| ||    
T  7878317 tgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaac 7878218  T
Q  527 aacctcatc 535  Q
    | | |||||    
T  7878217 agcttcatc 7878209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 684
Target Start/End: Original strand, 8609674 - 8609770
Alignment:
Q  588 ggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacact 684  Q
    |||||||||||||| || |||||||| ||||||||||||||  |  |||| ||||| | ||||||| ||||||| ||||||||  ||| ||||||||    
T  8609674 ggaatcctagaagaacctccaacaagaacaacatcatctacggttttcttatccatttcagcatcagtaagacatctttcaaccgtctccatacact 8609770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 709
Target Start/End: Original strand, 8659187 - 8659241
Alignment:
Q  655 taagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    |||||||||| |||||| | ||||||||||| |||||||| ||||||||||||||    
T  8659187 taagacaactctcaacagttttcatacactcattaaaaagatccatattcatttc 8659241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 523
Target Start/End: Original strand, 8558958 - 8559063
Alignment:
Q  418 tcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgcc 517  Q
    ||||||| || ||||| |||||||| ||||||||   ||||||||  ||||||||||||| | || ||||||| | |||  ||||||| |||||||| ||    
T  8558958 tcacttcaataccaagggacaaaggggtaacatctctcagcaccatgtttggaacattcttagtgtcttcactaagcaaaacagcctggacagctgcacc 8559057  T
Q  518 ataagc 523  Q
    ||||||    
T  8559058 ataagc 8559063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 538
Target Start/End: Original strand, 17267554 - 17267634
Alignment:
Q  458 caccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatcagg 538  Q
    |||||| |||||||||||||  | || | |||| ||||| |||||||||||||| || |||||||| ||| ||||||||||    
T  17267554 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagg 17267634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 8646067 - 8646114
Alignment:
Q  354 gccttccttaggaatttcttgtcttcaatacagtaattctcagcttct 401  Q
    |||||||||||||||||||  |||||||||| |||||| |||||||||    
T  8646067 gccttccttaggaatttctcatcttcaatacggtaattttcagcttct 8646114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 532
Target Start/End: Original strand, 8667005 - 8667108
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| |||||||| || |||||  | |||||||| || || ||||||| |  |||||||||||| |  ||||||||||||||||| |||||||| |||     
T  8667005 ccaagtgacaaaggggtcacatctcgtagcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataagcaacag 8667104  T
Q  529 cctc 532  Q
    ||||    
T  8667105 cctc 8667108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 535
Target Start/End: Complemental strand, 13333923 - 13333844
Alignment:
Q  456 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaacctcatc 535  Q
    |||||||| || || ||| ||| || |||||||||||| |  ||||||||||||||||| |||||||| ||| |||||||    
T  13333923 agcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 13333844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 535
Target Start/End: Original strand, 8658949 - 8659055
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| ||||| || |||||||| ||||||||||| ||||| ||||||| || |||||  || || |  ||||| |||| |||||| |||||||| |||     
T  8658949 ccaagtgacaatggggtaacatcttgcagcaccaagtttgggacattcttaaagcctttgcttaaaacagcagcttgaagagctgcaccataagcaacag 8659048  T
Q  529 cctcatc 535  Q
    |||||||    
T  8659049 cctcatc 8659055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 546
Target Start/End: Original strand, 8569897 - 8570014
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||| ||||| |||||||||||  |||  ||||| ||||||||| ||| || || ||||||   |||  ||||||||| |||||| || ||||| |||     
T  8569897 ccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaacag 8569996  T
Q  529 cctcatcaggattaatgc 546  Q
    |||||||||| |||||||    
T  8569997 cctcatcagggttaatgc 8570014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 414 - 562
Target Start/End: Original strand, 28219489 - 28219637
Alignment:
Q  414 cctatcacttccatgccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctg 513  Q
    ||||||||||  || ||||||||||||||||||||||| |||||||||||||| ||||| || | || ||||||||||||||| |||||||| |||||||    
T  28219489 cctatcacttggataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctg 28219588  T
Q  514 cgccataagccacaacctcatcaggattaatgcccttgcacaactcctt 562  Q
    | |||||||| ||| |||||||||| ||||||| ||| ||||| |||||    
T  28219589 caccataagcaacagcctcatcagggttaatgctcttacacaattcctt 28219637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 709
Target Start/End: Original strand, 28219660 - 28219796
Alignment:
Q  573 agttgttgtacattgggaatcctagaagacccaccaacaaggacaacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaa 672  Q
    ||||||||||| || ||||| ||||| || || |||||||| |||||||| | |||    ||||||||||| || |||||| | ||||| || ||||||     
T  28219660 agttgttgtacttttggaattctagaggagcctccaacaagaacaacatcgtgtacagccctcttgtccatattggcatcagtgagacacctctcaacag 28219759  T
Q  673 tcttcatacactccttaaaaaggtccatattcatttc 709  Q
    | |||| |||||| || ||||| |||||||| |||||    
T  28219760 ttttcaaacactcattgaaaagatccatattgatttc 28219796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 705
Target Start/End: Original strand, 12528090 - 12528378
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    ||||||||||||||| ||||||| ||||||  ||  || |||||| |||  ||||||||||||||||| |||||||||||||| || |||||||| |||     
T  12528090 ccaagagacaaaggtataacatcttgcagcgtcactttcggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacag 12528189  T
Q  529 cctcatcaggattaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||| || |||| |||| | |||||||||            ||||| || || || |  || |||||||||||||| || ||||||||||| ||    
T  12528190 cctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaatcctagacgagccaccaacaagtac 12528289  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattca 705  Q
    || ||||||||| || ||||||||||||||||||||  | | ||||||||||||  ||| ||||||||  | ||| |||||||||||||    
T  12528290 aatatcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccatattca 12528378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 709
Target Start/End: Original strand, 43744402 - 43744694
Alignment:
Q  429 ccaagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagccacaa 528  Q
    |||||||| ||||||| |||||| ||||||||||  |||||||| || | || ||||||||||||||| |||||||| |||||||| |||  ||| ||      
T  43744402 ccaagagaaaaaggtgcaacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactg 43744501  T
Q  529 cctcatcaggattaatgcccttgcacaactccttg------------tcctgtaacagttgttgtacattgggaatcctagaagacccaccaacaaggac 616  Q
    |||||||||| ||||||  ||| ||||| |||||             ||||| || ||||||||||| || ||||||||||| || ||||||||||| ||    
T  43744502 cctcatcagggttaatgttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaac 43744601  T
Q  617 aacatcatctaccctgctcttgtccatcttagcatcaataagacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttc 709  Q
    |||||||| ||    ||||||||||||||| |||||| |||||||||| |||||||| |||| |||||| || || || |||||||| |||||    
T  43744602 aacatcatgtatagcgctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttc 43744694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 50672316 - 50672358
Alignment:
Q  28 atggtttcagcacactgttgttggaatggtttagataacatgt 70  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  50672316 atggtttcagcacattgttgttggaatggtttagataacatgt 50672358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University