View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18509_low_4 (Length: 566)
Name: NF18509_low_4
Description: NF18509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18509_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 36634997 - 36634462
Alignment:
| Q |
17 |
caaacaaataatgatacaaatttaatattgtttaacccatcaagtagtgacatgttagaaaggaaaatgacttgaacagcaataataggttttactgtaa |
116 |
Q |
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| T |
36634997 |
caaacaaataatgatacaaatttaacattgtttaacccatcaagtagtgacatgttagaaaggaaaatgacttgaacagcaataataggttttactgtaa |
36634898 |
T |
|
| Q |
117 |
cggaaatataagctgaatttagatgaagcaacaatgaaatttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaa |
216 |
Q |
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| T |
36634897 |
cggaaatataagctgaatttagatgaagcaacaatgaaatttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaa |
36634798 |
T |
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| Q |
217 |
agatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtg |
316 |
Q |
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| T |
36634797 |
agatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtg |
36634698 |
T |
|
| Q |
317 |
tgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttgacccaagcatccaagtggacctgtgttatgtacccaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36634697 |
tgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttgacccaagcatccaagtggacctgtgttatgtacccaa |
36634598 |
T |
|
| Q |
417 |
aaattcctagccccgtggtcatatagtctctatcacaaataagagagtgaatgttaatttcagcaaaacaatttttctactgtggagttcaagtcaagaa |
516 |
Q |
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| T |
36634597 |
aaattcctagccccgtggtcatatagtctctatcacaaataagagagtgaatgttaatttcagcaaaacaatttttctactgtggagttcaagtcaagaa |
36634498 |
T |
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| Q |
517 |
tgttttcaataaaaaacgtaacaaattcattgttat |
552 |
Q |
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| T |
36634497 |
tgttttcaataaaaaacgtaacaaattcattgttat |
36634462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 156 - 492
Target Start/End: Complemental strand, 36639626 - 36639287
Alignment:
| Q |
156 |
tttttctagttatacttaccatgttttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggc |
255 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
36639626 |
ttttgctagatatacttaccatgttgtgagtagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggc |
36639527 |
T |
|
| Q |
256 |
cctgcaattttgcccacaaagcttgcaactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatc |
355 |
Q |
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| T |
36639526 |
cctgcaatttactgcagaaatcttgaagatattgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatc |
36639427 |
T |
|
| Q |
356 |
atggccaaatgtggcaacattttgacccaagcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatatagtctctat--caca |
453 |
Q |
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| T |
36639426 |
agtgccaaatagggaaataaaatgagccaagcatccaagtggactcgcgttatgtatccgaaaattcctgaccccgatgtcatacagtctctgtcacaca |
36639327 |
T |
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| Q |
454 |
aataagagagt-gaatgttaatttcagcaaaacaattttt |
492 |
Q |
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| T |
36639326 |
aataagagagtggaatgtcaatttctgcataactattttt |
36639287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 181 - 451
Target Start/End: Original strand, 46937192 - 46937462
Alignment:
| Q |
181 |
ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg |
280 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||||| |||| ||| || |
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| T |
46937192 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
46937291 |
T |
|
| Q |
281 |
caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga |
380 |
Q |
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| T |
46937292 |
aagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggcaacattctga |
46937391 |
T |
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| Q |
381 |
cccaagcatccaagtggacctgtgttatgtacccaaaaattcctagccccgtggtcatatagtctctatca |
451 |
Q |
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| T |
46937392 |
gctaagcatccaagaggacctgtattgtgtatccagaaatatctagccccctcatcatatagtctctatca |
46937462 |
T |
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