View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18509_low_5 (Length: 440)
Name: NF18509_low_5
Description: NF18509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18509_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 226 - 424
Target Start/End: Complemental strand, 45069200 - 45069000
Alignment:
| Q |
226 |
gactcttgatagttgacaaatgtcacactttgccatagaactaagtttgctttgttttattctatgataaccgttcgttgaaaaa--gagtaaacgctaa |
323 |
Q |
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| T |
45069200 |
gactcttgatagttgacaaatgtcacactttgccatagaactaagtttgctttgttttattctatgataaccgttcgttgaaaaaaagagcaaacgctaa |
45069101 |
T |
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| Q |
324 |
gaatagtcaacgtgttcgatttacatttatattacttaatatgcattttgtagtcataatcctctctctctatatatatccatcacatacctgtggtaaa |
423 |
Q |
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| T |
45069100 |
gaatagtcaacgtgttcgatttacatttatattacttaatatgcattttgtagtcataatcctctctctctatatatatccatcacatacctgtggtaaa |
45069001 |
T |
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| Q |
424 |
t |
424 |
Q |
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| T |
45069000 |
t |
45069000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 45069431 - 45069292
Alignment:
| Q |
1 |
tgtcccatatcttcttgcatgaatgagaattgaggattggaatgggaggataaaaagggtttgcattgagataggaacagaagcgatgcaaaacagcgag |
100 |
Q |
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| T |
45069431 |
tgtcccatatcttcttgcatgaatgagaattgaggattggaatgggaggataagaagggtttgcattgagataggaacagaagcgatgcaaaacagcgag |
45069332 |
T |
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| Q |
101 |
ggaatacacatgcatagtccaacgttgattgacatttttt |
140 |
Q |
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| T |
45069331 |
ggaatacgcatgcatagtccaacgttgattgacatttttt |
45069292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Complemental strand, 45084175 - 45084118
Alignment:
| Q |
359 |
ttaatatgcattttgtagtcataatcctctctctctatatatatccatcacatacctgtg |
418 |
Q |
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| T |
45084175 |
ttaatatgcattatgtagtcataatcctctctctc--tatacatccatcatatacctgtg |
45084118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 34506544 - 34506507
Alignment:
| Q |
353 |
tattacttaatatgcattttgtagtcataatcctctct |
390 |
Q |
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| T |
34506544 |
tattacttaatatgcattttgtagtcatgatcctctct |
34506507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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