View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18509_low_6 (Length: 434)
Name: NF18509_low_6
Description: NF18509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18509_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Original strand, 55265531 - 55265952
Alignment:
| Q |
10 |
catcatcaaatccaacaaaagcgttggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctgaaaga |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55265531 |
catcaccaaatccaacaaaagcgttggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctgaaaga |
55265630 |
T |
|
| Q |
110 |
accatatccaagacatgaatatgaatatgatgatgg-------tata-------tatgtattttaagcatgcaatcaataatctaacaaaagttaaacat |
195 |
Q |
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| T |
55265631 |
accatatccaagacatgaatatgaatatgaatatgaatatgattatgatgatggtttgtattttaagcatgcaatcaataatctaacaaaagttaaacat |
55265730 |
T |
|
| Q |
196 |
acttaatggtgcgctcaaggtcaccaacacgataaacaacatgaagcaaacgacggttgtctttctttggccattccaaatcaatctcagccatctgcaa |
295 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55265731 |
acttaatggtgcgttcaaggtcaccaacacgataaacaacatgaagcaaacgacggttgtctttctttggccattccaaatcaatctcagccatctgcaa |
55265830 |
T |
|
| Q |
296 |
cacaagcaaaatcaattaaggcaataaaacagtgcaacacaaacacattcatataaccaaaccataaataagctcaaaaacatgcaatcagccaagataa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55265831 |
cacaagcaaaatcaattaaggcaataaaacagtgcaacacaaacacattcacataaccaaaccataaataagctcaaaaacatgcaatcagccaagataa |
55265930 |
T |
|
| Q |
396 |
acgtgttaactaaccactgaac |
417 |
Q |
| |
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| T |
55265931 |
acgtgttaactaaccactgaac |
55265952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 55271442 - 55271782
Alignment:
| Q |
16 |
caaatccaacaaaagcgttggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctgaaagaaccata |
115 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55271442 |
caaatccaagaaaagcattggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctgaaagaaccata |
55271541 |
T |
|
| Q |
116 |
tccaagacatgaatatgaatatgatgatggtatatatgtattttaagcatgcaatcaataatctaacaaaagttaaacatacttaatggtgcgctcaagg |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55271542 |
tccaagacatgaatatgaatatgatgatggtat----gtattttaagcatgcaatcaataatctaacaaaagttaaacatacttaatggtgcgttcaagg |
55271637 |
T |
|
| Q |
216 |
tcaccaacacgataaacaacatgaagcaaacgacggttgtctttctttggccattccaaatcaatctcagccatctgcaacacaagcaaaatcaattaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55271638 |
tcaccaacacgataaacaacatgaagcaaacgacggttgtctttctttggccattccaaatcaatctcagccatctgcaacacaagcaaaagtaattaag |
55271737 |
T |
|
| Q |
316 |
gcaataaaacagtgcaacacaaacacattcatataaccaaaccataaataagc |
368 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
55271738 |
gcaataa--------aacacaaacacattcctataaccaaaccataaataagc |
55271782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 413
Target Start/End: Original strand, 55271793 - 55271840
Alignment:
| Q |
366 |
agctcaaaaacatgcaatcagccaagataaacgtgttaactaaccact |
413 |
Q |
| |
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|||||||| ||||||||||||| |||| ||| |||||||||||||||| |
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|
| T |
55271793 |
agctcaaacacatgcaatcagcaaagacaaaagtgttaactaaccact |
55271840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 8302964 - 8303053
Alignment:
| Q |
16 |
caaatccaacaaaagcgttggcatatttctcctcaggaacatctctctgcctcaaaagtttcatcccaagagcctcagtataaaacctga |
105 |
Q |
| |
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||||||||| |||||| ||||| ||||||||||| ||||||||||| | ||||||||| ||||| |||| ||| ||||| |||||||||| |
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| T |
8302964 |
caaatccaagaaaagcattggcgtatttctcctctggaacatctcttttcctcaaaagcttcattccaaaagcttcagtgtaaaacctga |
8303053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 43369158 - 43369186
Alignment:
| Q |
215 |
gtcaccaacacgataaacaacatgaagca |
243 |
Q |
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| T |
43369158 |
gtcaccaacacgataaacaacatgaagca |
43369186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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