View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1850_high_1 (Length: 819)
Name: NF1850_high_1
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Complemental strand, 52446231 - 52445741
Alignment:
| Q |
7 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
106 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52446231 |
cacaaagcaatacaacacaaacacaaagtgaatccgaaagaacgaaacaacgtcacatacacatgcactgcgactatgaatcatcaatgataaaatgaaa |
52446132 |
T |
|
| Q |
107 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
206 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52446131 |
caatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataa |
52446032 |
T |
|
| Q |
207 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
306 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
52446031 |
taaaataatgaacatcaacacaactatacattatgattgtgaacagagtatcaactcgaccaaagcattatacaacaacacat--------gaagagtaa |
52445940 |
T |
|
| Q |
307 |
atcaaacatcaacatcatcatacgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttgta |
406 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52445939 |
atcaaacatcaacatcatcatacgtgtcagggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaactttta |
52445840 |
T |
|
| Q |
407 |
gacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445839 |
gacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 503 - 804
Target Start/End: Complemental strand, 52445451 - 52445148
Alignment:
| Q |
503 |
atctccgatggaggtccttaccattgctggtggattgctccaa--gtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
600 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445451 |
atctccgacggaggtccttaccattgctggtggattgctccaacagtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
52445352 |
T |
|
| Q |
601 |
atcatgtgtctgaaaatatcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacaaaggagtggctgagcatgaatatcatatggatgt |
700 |
Q |
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|| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
52445351 |
attatgtgtccgaagatctcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacgaaggagtggctgagcatggatatcatatggatgt |
52445252 |
T |
|
| Q |
701 |
catcaagaatgacattgtgtacgagcatgacatggctgacaagtccgtggagcagtgcatgatgcaaattagggtcatgcacaggcgtggcagtgcaaca |
800 |
Q |
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| T |
52445251 |
catcaagaatgacattatgtacgagcatgacatggctgacaagtacgtggagcagtgcatgatgcaaattaaggtcatgcacaggcgtggcagtgcaaca |
52445152 |
T |
|
| Q |
801 |
cctt |
804 |
Q |
| |
|
|||| |
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|
| T |
52445151 |
cctt |
52445148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 52447167 - 52446722
Alignment:
| Q |
7 |
cacagagcaatacaacacaaacacagagtgaatccgaaagaacaaaacaacgtcacatacacatgcactgcgactatgaatcatcaataataaaatgaaa |
106 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||| |||||||||||||||||| ||| |||||| || ||||| |||||||||||||||||||||||||| |
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|
| T |
52447167 |
cacaaagcaatacaacacaagcacaaagtgaatctgaaagaacaaaacaacgtaacaaacacatacattgcgattatgaatcatcaataataaaatgaaa |
52447068 |
T |
|
| Q |
107 |
caatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataa |
206 |
Q |
| |
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||||||| ||| |||||||| | |||| | |||| | ||||||||||| |||||||| |||||| |||||||| ||| ||||||||||||||||||| |
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|
| T |
52447067 |
caatctacaaa---caaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataa |
52446972 |
T |
|
| Q |
207 |
taaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaa |
306 |
Q |
| |
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|| || |||||||||||||||||| |||||||| ||||||| | ||||||||||||||| |||||||||||||||||| || | ||||||| |
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| T |
52446971 |
tagaacaatgaacatcaacataaccatacattacgattgtggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaa |
52446880 |
T |
|
| Q |
307 |
atcaaacatcaacatcatcat----------acgtgtcacggttcaaactcatatcatgaggttcgacctagaaattttgatatttttacatgtttagtt |
396 |
Q |
| |
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|||||||||||| |||||| | |||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |
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| T |
52446879 |
atcaaacatcaatatcatcgtacataagtgaacgtatcaaggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacct |
52446780 |
T |
|
| Q |
397 |
aaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatat |
454 |
Q |
| |
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|||||||||||||| || ||||||| || |||| |||||| ||| ||||||||||||| |
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|
| T |
52446779 |
aaaacttgtagacagatatgttagtgcttaataatttgtatgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 371 - 500
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
371 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
470 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
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|
| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
|
| Q |
471 |
gataaggtgtgtataaatatgtctttaatt |
500 |
Q |
| |
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|||||| ||||||| |||||| ||||||| |
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|
| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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