View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1850_high_2 (Length: 592)
Name: NF1850_high_2
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 8537309 - 8536750
Alignment:
| Q |
18 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537309 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgct |
8537210 |
T |
|
| Q |
118 |
ttggatgactatctctacaatgtgaagaaagttatgaaggatatgaatgttagttctttgcttcctacgcgaagcaaaaataagatcacttccctaatta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
8537209 |
ttggatgactatctctacaatgtgaagaaagttatgaaggatacgaatgttagttctttgcttcccacgcaaagcaaaaataagatcacttccctaatta |
8537110 |
T |
|
| Q |
218 |
caaaatgtgaatatttgcttgatggtgacaagaatgaagaaacatatgtgtttgtgaacatgttgaagaagcttgagagcatcactgaatctactttggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537109 |
caaaatgtgaatatttgcttgatggtgacaagaatgaagaaacatatgtgtttgtgaacatgttgaagaagcttgagagcatcactgaatctactttggg |
8537010 |
T |
|
| Q |
318 |
catgaaaagaaatggttaggttgattaagatactgattcagttatagttagtagttttttaccaattttctttgcatccgtttctataactgtggaccta |
417 |
Q |
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|||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537009 |
catgaaaaaaaatggttaggttgattaagatactgttttagttatagttagtagttttttaccaattttctttgcatccgtttctataactgtggaccta |
8536910 |
T |
|
| Q |
418 |
cttattttgtttctttgattacatattttatcattttggtaaaatatgctatagtgggctagtttatcttttgttattttgagtatcattaaacttgaga |
517 |
Q |
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| T |
8536909 |
cttattttgtttctttgattacatattttatcattttggtaaaatatgctatagtgggctagtttatcttttgttattttgagtatcattaaacttgaga |
8536810 |
T |
|
| Q |
518 |
ttgatcttcaaactaactgaattctatttgatgttatggatctcattatatggttttgat |
577 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8536809 |
ttgatcttcaaactaaccgaattctatttgatgttatggatctcattatatggttttgat |
8536750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 8601244 - 8601103
Alignment:
| Q |
18 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgct |
117 |
Q |
| |
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|||| ||||||| || |||||| ||||||| || |||||||||||||||||||||| |||||||| ||||||||||||||| | | ||||| |||| | |
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| T |
8601244 |
aagactatcaaccgaagaaattgagagaatgatccaagaagctgagaatttcaaagatgaagacatgaagttcaagaagaaagttaaagcaatgaatgat |
8601145 |
T |
|
| Q |
118 |
ttggatgactatctctacaatgtgaagaaagttatgaaggat |
159 |
Q |
| |
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||||||| ||||| |||| | ||| ||||| ||||||||| |
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| T |
8601144 |
ctggatgattatctttacactatgagaaaagtaatgaaggat |
8601103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 8383778 - 8383911
Alignment:
| Q |
22 |
ttatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgctttgg |
121 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||| || ||||||||||| || |||||||| ||||| | ||||||| | | ||||| |||||||||| |
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| T |
8383778 |
ttatcaactgatgaaattgagagaatgatccaagaggcagagaatttcaaggctgaagacatgaagtttatgaagaaagttaaagcaatgaatgctttgg |
8383877 |
T |
|
| Q |
122 |
atgactatctctacaatgtgaagaaagttatgaa |
155 |
Q |
| |
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| || ||||| ||||| ||| |||||| ||||| |
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| T |
8383878 |
acgattatctttacaacatgaggaaagtaatgaa |
8383911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 8569567 - 8569465
Alignment:
| Q |
35 |
aaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctcta |
134 |
Q |
| |
|
||||| ||||||| || || ||||||||||||||||| || ||||||| |||||||| |||||| ||| |||| ||||||||||||||| ||||| || |
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| T |
8569567 |
aaattgagagaatgatccaggaagctgagaatttcaaggctcaagacatgaagttcaaaaagaaagttgaagcaagaaatgctttggatgattatcttta |
8569468 |
T |
|
| Q |
135 |
caa |
137 |
Q |
| |
|
||| |
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|
| T |
8569467 |
caa |
8569465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 159
Target Start/End: Complemental strand, 8609183 - 8609049
Alignment:
| Q |
25 |
tcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgctttggatg |
124 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||| | ||||| || |||||| | | ||||| |||| |||||||| |
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| T |
8609183 |
tcaactgaagaaattgagagaatgattcaagaagctgagaatttcaaagaggaagacttgaagtttaaaaagaaagttaaagcaatgaatgttttggatg |
8609084 |
T |
|
| Q |
125 |
actatctctacaatgtgaagaaagttatgaaggat |
159 |
Q |
| |
|
| || || ||||| || |||||| ||||||||| |
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|
| T |
8609083 |
attacctttacaacatgcggaaagtaatgaaggat |
8609049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 8544906 - 8544765
Alignment:
| Q |
18 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgct |
117 |
Q |
| |
|
||||||||||| || |||||| ||||||| || || |||||||| |||||||| || ||||||| ||||||| || ||| ||| |||| ||||||| |
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| T |
8544906 |
aagattatcaagggaagaaattgagagaatgatccaggaagctgacaatttcaaggctcaagacatgaagttcagaaaaaaagttgaagcaagaaatgct |
8544807 |
T |
|
| Q |
118 |
ttggatgactatctctacaatgtgaagaaagttatgaaggat |
159 |
Q |
| |
|
||||| | ||||| |||||||||| |||||| ||||||||| |
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| T |
8544806 |
ttggagtattatctttacaatgtgaggaaagtaatgaaggat |
8544765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 8580911 - 8580828
Alignment:
| Q |
77 |
aagacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtgaagaaagttatgaaggata |
160 |
Q |
| |
|
||||||| |||||||||||||| | | ||||||||||||||||| || ||||| ||||| |||| |||||| ||| |||||| |
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|
| T |
8580911 |
aagacatggagttcaagaagaaagttaaagcaataaatgctttggacgattatctttacaaagtgaggaaagtaatggaggata |
8580828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 8575548 - 8575431
Alignment:
| Q |
42 |
gagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgctttggatgactatctctacaatgtg |
141 |
Q |
| |
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|||||| |||||||||||||| | |||||| || ||||||| |||||||||||||| | ||||||||||| ||||| || ||||| |||||| | |
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| T |
8575548 |
gagaatgattcaagaagctgaaattttcaaggctcaagacatggagttcaagaagaaagttacagcaataaatgcattggacgattatcttcacaatgcg |
8575449 |
T |
|
| Q |
142 |
aagaaagttatgaaggat |
159 |
Q |
| |
|
| |||| | ||||||||| |
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|
| T |
8575448 |
aggaaattaatgaaggat |
8575431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 29582739 - 29582792
Alignment:
| Q |
18 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaa |
71 |
Q |
| |
|
|||||| |||||||| |||||| ||||||| || |||||||| ||||||||||| |
|
|
| T |
29582739 |
aagattgtcaactgaagaaattgagagaatgatccaagaagcagagaatttcaa |
29582792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 12527777 - 12527635
Alignment:
| Q |
18 |
aagattatcaactgatgaaattaagagaataattcaagaagctgagaatttcaaagcagaagacataaagttcaagaagaaatctgaggcaataaatgct |
117 |
Q |
| |
|
||||||||||| ||| |||||| |||||| || || ||||||||||||||||| || ||||| || |||||||| |||||| | | ||||| |||||| |
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|
| T |
12527777 |
aagattatcaagtgaagaaattgggagaatgatccaggaagctgagaatttcaaggctgaagatatgaagttcaaaaagaaagttaaagcaatcaatgct |
12527678 |
T |
|
| Q |
118 |
ttggatgactatctctacaatgtgaagaaagttatgaaggata |
160 |
Q |
| |
|
|||||||||||||| ||| |||||| |||| | |||||||||| |
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|
| T |
12527677 |
ttggatgactatctttaccatgtgaggaaaatcatgaaggata |
12527635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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