View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1850_high_3 (Length: 585)
Name: NF1850_high_3
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_high_3 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Original strand, 28597552 - 28598122
Alignment:
| Q |
18 |
tggagaaagcacttgaagttcagcttgcatctgttaaaacaaaaatatatatagaggtatttttaaaagagatgaaaataaagggtgactaaaattaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28597552 |
tggagaaagcacttgaagttcagcttgcatctgttaaaacaaaaatatatatagaggtatttttaaaagagatgaaaataaatggtgactaaaattaaac |
28597651 |
T |
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| Q |
118 |
attatagtattaattttgtcaaaatnnnnnnncattatagtattaattgaaggtaacaatttatgtttatgtactatataat----ataccagttgtaga |
213 |
Q |
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| T |
28597652 |
attatagtattaattttgtcaaaataaaaaatcattatagtattaattgaaggtaacaatttatgtttatgtactatataatttatataccagttgtaga |
28597751 |
T |
|
| Q |
214 |
gcaccatttctggttccatttattccactagatatcacttcagttgtggagcttcttgcaatcacacaagggaacatctctgaccatcgattctgttata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28597752 |
gcaccatttctggttccatttattccactagatatcacttcagttgtggagcttcttgcaatcacacaagggaacatctctgaccatcgattctgttata |
28597851 |
T |
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| Q |
314 |
caacagaaacaaaatcagtttcaagtacaacaatttactatatataaataaatcaccactgaaaaaattatttatgcaacataaatttattaagacaaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28597852 |
caacagaaacaaaatcagtttcaagtacaacaatttaatatatataaataaatcaccactgaaaaaattatttatgcaacataaatttattaagacaaaa |
28597951 |
T |
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| Q |
414 |
tataaaattagtctataataattttatcatcaaacaaattaaattgctttctagtttcaaaaatattctatactagtaaactagtagttaaaaatagctt |
513 |
Q |
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| T |
28597952 |
tataaaattagtctataataattttatcatcaaacaaataaaattgctttctagtttcaaaaatattctatagtagtaaactagtagtaaaaaatagctt |
28598051 |
T |
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| Q |
514 |
gattatgtaacctacataatatagttcaatttaaaaaagattcaatataaggaggacaaatctcaaaaacat |
585 |
Q |
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| T |
28598052 |
gattatgtaacctacatgatatagttcaatttaaaaaa-attcaatataaggaggacaaatctcaaaaacat |
28598122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 12325903 - 12326008
Alignment:
| Q |
205 |
agttgtagagcaccatttctggttccatttattccactagatatcacttcagttgtggagcttcttgcaatcacacaagggaacatctctgaccatcgat |
304 |
Q |
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||||| || ||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||| | |||||| ||||||||| ||| |||| |
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| T |
12325903 |
agttgaagtgcaccatttcttgttccatttattccattagatatcacttcatttgtggaggttcttgcaatgatacaaggaaacatctctatccaacgat |
12326002 |
T |
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| Q |
305 |
tctgtt |
310 |
Q |
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|||||| |
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| T |
12326003 |
tctgtt |
12326008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 585
Target Start/End: Original strand, 39251557 - 39251598
Alignment:
| Q |
544 |
ttaaaaaagattcaatataaggaggacaaatctcaaaaacat |
585 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39251557 |
ttaaaaaatattcaatacaaggaggacaaatctcaaaaacat |
39251598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 544 - 585
Target Start/End: Complemental strand, 22534637 - 22534593
Alignment:
| Q |
544 |
ttaaaaaagattcaata---taaggaggacaaatctcaaaaacat |
585 |
Q |
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| T |
22534637 |
ttaaaaaagattcaatacaataaggaggacaaatctcaaaaacat |
22534593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 585
Target Start/End: Complemental strand, 17975365 - 17975325
Alignment:
| Q |
544 |
ttaaaaaagattcaatataaggaggacaaatctcaaaaacat |
585 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| |
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| T |
17975365 |
ttaaaaaagattcaataca-ggaggacaaatctcaaaaacat |
17975325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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