View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1850_high_5 (Length: 426)
Name: NF1850_high_5
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_high_5 |
 | |
|
| [»] scaffold0779 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0779 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 2013 - 1619
Alignment:
| Q |
14 |
agaaaggactggattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaggctctaga |
113 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2013 |
agaaaagaatggattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaagctctaga |
1914 |
T |
|
| Q |
114 |
taccatgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1913 |
taccatgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttac |
1814 |
T |
|
| Q |
214 |
agagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggtta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1813 |
agagattccttatataggttgttattgcatgtacactcaatactaatgtgtactaggtgtattacatcatagctcaacatccctataatctaggaggtta |
1714 |
T |
|
| Q |
314 |
gttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1713 |
gttattcctagtaactaactcaaactagtttagtgttttctataacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
1619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 26363550 - 26363944
Alignment:
| Q |
14 |
agaaaggactggattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaggctctaga |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26363550 |
agaaaggactagattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaagctctaga |
26363649 |
T |
|
| Q |
114 |
taccatgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26363650 |
taccatgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttac |
26363749 |
T |
|
| Q |
214 |
agagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggtta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26363750 |
agagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagttgtattacatcatagctcaacatccctataatctaggaggtta |
26363849 |
T |
|
| Q |
314 |
gttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26363850 |
gttattcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
26363944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 18503492 - 18503885
Alignment:
| Q |
14 |
agaaaggactggattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaggctctaga |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
18503492 |
agaaaggactagattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaagctct-ga |
18503590 |
T |
|
| Q |
114 |
taccatgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
18503591 |
taccatgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattatgcatagaatgaaagttagttac |
18503690 |
T |
|
| Q |
214 |
agagattccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggtta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18503691 |
agagattccttatataggttgttattgcatgtacactcaatactaatgtgtactggctgtattacatcatagctcaacatccctataatctaggaggtta |
18503790 |
T |
|
| Q |
314 |
gttattcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18503791 |
gttattcctagtaactaactcaaactagttcagggttttctataacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
18503885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 119 - 408
Target Start/End: Original strand, 26358949 - 26359238
Alignment:
| Q |
119 |
tgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagaga |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26358949 |
tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaaatatgaagcaaagaatagtattttgcatagaatgaaagttagttacagaga |
26359048 |
T |
|
| Q |
219 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26359049 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
26359148 |
T |
|
| Q |
319 |
tcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26359149 |
tcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
26359238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 119 - 408
Target Start/End: Original strand, 18497285 - 18497574
Alignment:
| Q |
119 |
tgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagaga |
218 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18497285 |
tgttgagttacaaaaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagaga |
18497384 |
T |
|
| Q |
219 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18497385 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactggctgtattacatcatagctcaacatccctataatctaggaggttagttat |
18497484 |
T |
|
| Q |
319 |
tcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18497485 |
tcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
18497574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 25 - 408
Target Start/End: Original strand, 25577930 - 25578313
Alignment:
| Q |
25 |
gattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaggctctagataccatgttga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25577930 |
gattgatcggtgagaacgtcgttgttgttacgaggcgccattgatggagcttgaaaaagcttgcggaaaaggaatcaaaaagctctagataccatgttga |
25578029 |
T |
|
| Q |
125 |
gttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattcctt |
224 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578030 |
gttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattcctt |
25578129 |
T |
|
| Q |
225 |
atataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctag |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578130 |
atataggttgttattgcatgtacactcaatactaatgtgtactagttgtattacatcatagctcaacatccctataatctaggaggttagttattcctag |
25578229 |
T |
|
| Q |
325 |
taactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578230 |
taactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
25578313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 119 - 408
Target Start/End: Original strand, 25573306 - 25573595
Alignment:
| Q |
119 |
tgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagaga |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25573306 |
tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagaga |
25573405 |
T |
|
| Q |
219 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25573406 |
ttccttatataggttgttattgtatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
25573505 |
T |
|
| Q |
319 |
tcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25573506 |
tcctagtaactaactcaaactagtttagagttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
25573595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 3856753 - 3856465
Alignment:
| Q |
119 |
tgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagaga |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3856753 |
tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaacaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagaga |
3856654 |
T |
|
| Q |
219 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
318 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3856653 |
ttccttatataggttgctattgcatgtacactcaatactaatgtgtactagttgtattacatcatagctcaacatccctataatctaggaggttagttat |
3856554 |
T |
|
| Q |
319 |
tcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3856553 |
tcctagtaactaactcaaactagttcag-gttttctgcaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
3856465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 119 - 408
Target Start/End: Original strand, 23173404 - 23173693
Alignment:
| Q |
119 |
tgttgagttacaagaatattgaagcagaagagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagaga |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23173404 |
tgttgagttacaagaatattgaaacagaagagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagaga |
23173503 |
T |
|
| Q |
219 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23173504 |
ttccttatataggttgttattgcatgtacactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttat |
23173603 |
T |
|
| Q |
319 |
tcctagtaactaactcaaactagtttagagttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
408 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23173604 |
tcctagtaactaactcaaactagttcagggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
23173693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 2984442 - 2984380
Alignment:
| Q |
72 |
agcttgaaaaagcttgcggaaaaggaatcaaaaggctctagataccatgttgagttacaagaa |
134 |
Q |
| |
|
||||||| ||||||||||||| || |||||| ||||||||||||||| || ||| ||||||| |
|
|
| T |
2984442 |
agcttgataaagcttgcggaagagagatcaaagggctctagataccatattaagtaacaagaa |
2984380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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