View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1850_low_12 (Length: 291)
Name: NF1850_low_12
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_low_12 |
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| [»] scaffold0779 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 25573334 - 25573595
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
25573334 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgtatgta |
25573433 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25573434 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
25573533 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25573534 |
agttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
25573595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 25578052 - 25578313
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25578052 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
25578151 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
25578152 |
cactcaatactaatgtgtactagttgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
25578251 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25578252 |
ggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
25578313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 3856725 - 3856465
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3856725 |
agagagaaaagtgaagaacaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattccttatataggttgctattgcatgta |
3856626 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
3856625 |
cactcaatactaatgtgtactagttgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
3856526 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3856525 |
-gttttctgcaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
3856465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 1880 - 1619
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1880 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
1781 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1780 |
cactcaatactaatgtgtactaggtgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
1681 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1680 |
tgttttctataacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
1619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 23173432 - 23173693
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23173432 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
23173531 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23173532 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
23173631 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23173632 |
ggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
23173693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 18497313 - 18497574
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18497313 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
18497412 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18497413 |
cactcaatactaatgtgtactggctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
18497512 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18497513 |
ggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
18497574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 26358977 - 26359238
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26358977 |
agagagaaaagtgaagaaaaaatatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
26359076 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26359077 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
26359176 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26359177 |
ggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
26359238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 26363683 - 26363944
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26363683 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatagtattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
26363782 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26363783 |
cactcaatactaatgtgtactagttgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
26363882 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26363883 |
ggttttctgtaacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
26363944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 18503624 - 18503885
Alignment:
| Q |
12 |
agagagaaaactgaagaaaaagtatgaagcaaagaatattattttgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18503624 |
agagagaaaagtgaagaaaaagtatgaagcaaagaatagtattatgcatagaatgaaagttagttacagagattccttatataggttgttattgcatgta |
18503723 |
T |
|
| Q |
112 |
cactcaatactaatgtgtactagctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagtttag |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18503724 |
cactcaatactaatgtgtactggctgtattacatcatagctcaacatccctataatctaggaggttagttattcctagtaactaactcaaactagttcag |
18503823 |
T |
|
| Q |
212 |
agttttctgtaactcgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
273 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18503824 |
ggttttctataacttgtggcacaagcaactgagatgcattgtgttcctgttgttgatcttcc |
18503885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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