View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1850_low_4 (Length: 579)
Name: NF1850_low_4
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 318 - 562
Target Start/End: Original strand, 12439234 - 12439479
Alignment:
| Q |
318 |
aataattttaacggtgttttaagattcattaagcttcagatcttcgagggaagacaatagcctattc--gctgcctttataaaggaggttgggtaaagtt |
415 |
Q |
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| T |
12439234 |
aataattttaacggtgttttaagattcattaagcttcagatcttcgagggaagacaatggcctattctcgctgcctttataaaggaggttgggtaaagtt |
12439333 |
T |
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| Q |
416 |
agggcaaaggatggaatgaatttacactagagaacaatttagaagaaggtgatatatgtgtttttaaactacttagaactagagaggaatttttgcaagt |
515 |
Q |
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| T |
12439334 |
agggcaa-ggatggaatgaatttacactagagaacaatttagaagaaggtgatatatgtgtttttaaactacttaaaactagagaggaatttttgcaagt |
12439432 |
T |
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| Q |
516 |
tactttgtttcgtgtaaaagaggatgaatctattagaaggttaattc |
562 |
Q |
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| T |
12439433 |
tactttgtttcgtgtaaaagaggatgaatctattagaaggttaattc |
12439479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 85 - 326
Target Start/End: Original strand, 12438528 - 12438771
Alignment:
| Q |
85 |
tatatattactttagtcaagcttaatttctttctcatttatttacgagttaaatacattttgatccccataaaattgcgaccgttcaggtt--tagttta |
182 |
Q |
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| T |
12438528 |
tatatattactttagtcaggcttaatttctttctcatttatttaaaagttaaatacattttgatccccataaaattgcgaccgttcatgtttatagttta |
12438627 |
T |
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| Q |
183 |
tataatctgttcattcattttagttcctatatctaacaaaactacatgtttttaatccctctgtaaggactaaaaacacagnnnnnnngcttgttttgtt |
282 |
Q |
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| T |
12438628 |
tataatctgttcattcattttagtttctatatctaacaaaactacatgtttttaatccttttgtaaggactaaaaacacagtttttttgtttgttttgtt |
12438727 |
T |
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| Q |
283 |
ttacatagattgaagaaatacatgtagtcatagtgaataatttt |
326 |
Q |
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| T |
12438728 |
ttacatagattgaagaaatacatgtagtcatagtgaataatttt |
12438771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 321 - 539
Target Start/End: Original strand, 12445651 - 12445868
Alignment:
| Q |
321 |
aattttaacggtgttttaagattcattaagcttcagatcttcgagggaagacaatagcctattcgctgcctttataaaggaggttgggtaaagttagggc |
420 |
Q |
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| T |
12445651 |
aatttgaacggtgtttcaggattcattaagcttcagatctccgatgggagacagtggcctgttcgctgcctttataaaggaggccgggcaaagttaagcc |
12445750 |
T |
|
| Q |
421 |
aaaggatggaatgaatttacactagagaacaatttagaagaaggtgatatatgtgtttttaaactacttagaactagagaggaatttttgcaagttactt |
520 |
Q |
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| T |
12445751 |
aa-ggatggtatgagtttacattagagaacaatttaggggaaggcgatatctgtgttttcgagctgcttagaaccagagaggtagtcctgcaagttactt |
12445849 |
T |
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| Q |
521 |
tgtttcgtgtaaaagagga |
539 |
Q |
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| T |
12445850 |
tgtttcgtgtaaaagagga |
12445868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 12438414 - 12438483
Alignment:
| Q |
17 |
caaaggtcaagtatttaacatgtatagttttctccatttttgttagatgaagctccaacagccttggtta |
86 |
Q |
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| T |
12438414 |
caaagttcaagtatttaatatgtaaagttttctccatttttgttagatgaagctccaacagccttggtta |
12438483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 543
Target Start/End: Original strand, 12428778 - 12428899
Alignment:
| Q |
422 |
aaggatggaatgaatttacactagagaacaatttagaagaaggtgatatatgtgtttttaaactacttagaactagagaggaatttttgcaagttacttt |
521 |
Q |
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| T |
12428778 |
aaggatggtacgaatttacacaagagaacggtttaggggaaggggatatctgtgtctttgaactgcttaataccagatatgtagtgttgcaagttacttt |
12428877 |
T |
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| Q |
522 |
gtttcgtgtaaaagaggatgaa |
543 |
Q |
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| T |
12428878 |
gtttcgtttaaaagaggatgaa |
12428899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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