View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1850_low_6 (Length: 420)
Name: NF1850_low_6
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 37137796 - 37138186
Alignment:
| Q |
13 |
aatattaggacttttcttttcatttaatttgatgagtgtatagatagtgttaaagaaaaagatgctcttgtacaatttctactcattgcattgcattcat |
112 |
Q |
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| T |
37137796 |
aatattaggacttttcttttcatttaatttgatgactgtataaatagtgtcaaagaaaaagatgctcttgtacaatttctactcattgcattgcattcat |
37137895 |
T |
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| Q |
113 |
atactcttgtatgattcttgccatgacagtgcactaaagtcatatgaaacttgtnnnnnnnncagggaagaaaccagtccaggaggatcaagaggaagaa |
212 |
Q |
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| T |
37137896 |
atactcttgtatgattcttgccatgacagtgcactaaagtcatatgaaacttgtaaaaaaaacaggaaagaaaccagcccaggaggatcagacggaagaa |
37137995 |
T |
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| Q |
213 |
ctgaatacaatgtacgatgatgatttggattgcttgctcaacaattttccctcagaaataccaatgcctgaatggtattgtagaggaaaaagtcagtcat |
312 |
Q |
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| T |
37137996 |
ctgaatacaatgtatgatgatgatttggattgcttgctcaacaattttccctcagaaataccaatgcctgaatggtattgtagaggaaaaagtcagtcat |
37138095 |
T |
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| Q |
313 |
tggaaactgaaacaccaactgatgaaggcggtcccaccaatcaagaatttgcttggactcttggatcaaattggaacaacatgcctggcat |
403 |
Q |
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| T |
37138096 |
tgggaactgaaattccaactgatgaaagcggtcccaccaatcaagaatttgcttggactcttggatcaaattggaacaacatgccaggcat |
37138186 |
T |
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