View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1850_low_8 (Length: 353)
Name: NF1850_low_8
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 6292109 - 6291774
Alignment:
| Q |
18 |
gaaactaccggctgaaggagggtacgaagtttccaacactgctaaagaacttggtgtagaaacccaaatgtttgcgtagcctaatttagctaaagcattg |
117 |
Q |
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| T |
6292109 |
gaaactaccggctgaaggagggtacgaagtttccaacactgctaaagaacttggtgtagaaacccaaatgtttgcatagcctaatttagctaaagcattg |
6292010 |
T |
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| Q |
118 |
tagatattaatcaccgccggaacaagatgttgaagaagagttgtatcatcgtcggtgaaaacttcgttacctacttgaattccggtgatttttgtgttag |
217 |
Q |
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| T |
6292009 |
tagatattaatcaccgccggaacaagatgttgaagaagagttgtatcatcgtcggtgaaaacttcgttacctacttgaattccggtgatttttgtgttag |
6291910 |
T |
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| Q |
218 |
gtaggtacggtatgatgcggctgttcacccattgaagtgcttgttgtggatcttctaattggtttaatatttcattttccaccgtcacacttacttcaat |
317 |
Q |
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| T |
6291909 |
gtaggtacggtatgatgcggctgttcacccattgaagtgcttgttgtggatcatctaattggtttaatatttcattttcaaccgtcacaattacttcaat |
6291810 |
T |
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| Q |
318 |
atttgctttttaaaatgtactaagaatttgaggatt |
353 |
Q |
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| T |
6291809 |
atttgattttgaaaatgtacttagaatttgaggatt |
6291774 |
T |
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Back To:
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 296
Target Start/End: Original strand, 32856799 - 32856998
Alignment:
| Q |
97 |
cctaatttagctaaagcattgtagatattaatcaccgccggaacaagatgttgaagaagagttgtatcatcgtcggtgaaaacttcgttacctacttgaa |
196 |
Q |
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| T |
32856799 |
cctaattgaactagagcattgtaaatgttgatcactgctggaacaagatattgaattagggttgtgtcgagttctgtgaaaacttcattccctacttgaa |
32856898 |
T |
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| Q |
197 |
ttccggtgatttttgtgttaggtaggtacggtatgatgcggctgttcacccattgaagtgcttgttgtggatcttctaattggtttaatatttcattttc |
296 |
Q |
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| T |
32856899 |
ttccagtgatctttgtgtctggaagatatggtttgatattggtatttacccattgaagtgcttgttgtggatcatttaattggtttagtatttgattttc |
32856998 |
T |
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