View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1850_low_9 (Length: 352)
Name: NF1850_low_9
Description: NF1850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1850_low_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 6291574 - 6291731
Alignment:
| Q |
195 |
ccttaaatttttaactctaagaattactataacttgtacaatatttagtactaattcattgattaatttgaaattatatagatattggatactgttttgg |
294 |
Q |
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| T |
6291574 |
ccttaaatttttaactctaagaattactataacttgtacaatatttagtactaattcattgattaatttgaaattatatagatattggatactgttttgg |
6291673 |
T |
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| Q |
295 |
gatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtacta |
352 |
Q |
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| T |
6291674 |
gatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagttcttgtacta |
6291731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6291380 - 6291510
Alignment:
| Q |
1 |
aaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcctagaatcttttgtcttcc |
100 |
Q |
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| T |
6291380 |
aaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcctagaatcttttctcttcc |
6291479 |
T |
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| Q |
101 |
ttcctcacaatgacaatattcatcacaacaa |
131 |
Q |
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| T |
6291480 |
ttcctcacaatgacaatattcatcacaacaa |
6291510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 32857160 - 32857108
Alignment:
| Q |
290 |
tttgggatcaactatggtcaagttgctaacaatttgccacaacctgaaaaagt |
342 |
Q |
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| T |
32857160 |
tttggaataaactatggacaagtagctaacaatttgccacaaccagaaaaagt |
32857108 |
T |
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