View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18510_high_1 (Length: 510)
Name: NF18510_high_1
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18510_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Original strand, 13972033 - 13972507
Alignment:
| Q |
13 |
aatatagaacggaagtagatgaatgccttgtacagttaacaattaaggtgacaaaaattccaactttgaagatgaactttttagttaagcatgtagttct |
112 |
Q |
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| T |
13972033 |
aatatagaacggaagtagatgaatgccttgtacagttaacaattaaggtgacaaaaattccaactttgaagatgaactttttagttaagcatgtagt-ct |
13972131 |
T |
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| Q |
113 |
ggatgctgattttcccgtcaatgttaagttgtctaatgttcatttatggctactggccgtaattttatgcagatctcagatgcaggtcctgttctcgata |
212 |
Q |
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| T |
13972132 |
ggatgctgatttgcccgtcaaggttaagttgtctaatgttcatttatggctactggctgtaatgttatgcagatctcagatgcaggtcctgttctcgata |
13972231 |
T |
|
| Q |
213 |
ccatggccgtgttgttagaaaacatgtctaatattacagttatggcaagaaccttgattgctgcagtttatagaacttctcaaatagttgcatctatacc |
312 |
Q |
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| T |
13972232 |
ccatggccgtgttgttagaaaacatgtctaatattacagttatggcaagaaccttgattgctgcagtttatagaacttctcaaatagttgcatctatacc |
13972331 |
T |
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| Q |
313 |
gaatttgtcgtatcagaacaaggcaagttacttaaattgcctgattcgtaataactgtaatatttccttacttctttctttctcannnnnnnctgt-aac |
411 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| ||| |
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| T |
13972332 |
gaatttgtcgtatcagaacaaggcaagttatttaaattgcctgattcgttataactgtaatatttccttac----ttctttctcatttttttctgtaaac |
13972427 |
T |
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| Q |
412 |
ttgaaactctattctttaggcattccctgaggcattatttcatcagttactcctggcaatggtccatgcagaccatgaaacc |
493 |
Q |
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| T |
13972428 |
ttgaaa--ctattctttaggcattccctgaggcattatttcatcagttactcctggcaatggtccatgcagaccatgaaacc |
13972507 |
T |
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