View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18510_high_14 (Length: 301)

Name: NF18510_high_14
Description: NF18510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18510_high_14
NF18510_high_14
[»] chr7 (5 HSPs)
chr7 (1-198)||(48635818-48636012)
chr7 (207-258)||(9805434-9805485)
chr7 (207-266)||(35081601-35081660)
chr7 (208-266)||(35080283-35080341)
chr7 (207-257)||(23621990-23622040)
[»] chr2 (5 HSPs)
chr2 (207-266)||(27552451-27552510)
chr2 (207-266)||(12812835-12812894)
chr2 (208-258)||(27553815-27553865)
chr2 (211-256)||(10853155-10853200)
chr2 (207-255)||(10851912-10851960)
[»] chr4 (4 HSPs)
chr4 (207-266)||(8747690-8747749)
chr4 (207-266)||(8749046-8749105)
chr4 (208-266)||(33997896-33997954)
chr4 (207-266)||(8896953-8897012)
[»] chr5 (5 HSPs)
chr5 (207-266)||(124529-124588)
chr5 (208-266)||(5504136-5504194)
chr5 (207-266)||(5502917-5502975)
chr5 (208-264)||(3598924-3598980)
chr5 (207-266)||(121348-121407)
[»] chr3 (7 HSPs)
chr3 (207-266)||(51220602-51220661)
chr3 (208-266)||(10584082-10584140)
chr3 (208-266)||(32829740-32829798)
chr3 (208-264)||(26722533-26722589)
chr3 (207-258)||(53157184-53157234)
chr3 (208-266)||(51219462-51219520)
chr3 (207-256)||(32831100-32831149)
[»] chr1 (4 HSPs)
chr1 (208-266)||(46312065-46312123)
chr1 (207-256)||(3000223-3000272)
chr1 (208-258)||(46525850-46525900)
chr1 (208-256)||(2999491-2999539)
[»] chr8 (3 HSPs)
chr8 (207-256)||(13883878-13883927)
chr8 (207-264)||(38612218-38612275)
chr8 (207-264)||(38613419-38613476)
[»] chr6 (1 HSPs)
chr6 (211-266)||(22417661-22417716)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 48635818 - 48636012
Alignment:
Q  1 acaattgtttattttttaaggg-ttgaacatcgaagttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggcttgatttcattcatt 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635818 acaattgtttattttttaaggggttgaacatcgaagttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggcttgatttcattcatt 48635917  T
Q  100 cattcataaacaatgcattcagtgtacgtacctcctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagtacagttttagcaa 198  Q
    ||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635918 cattcataaacaatgcattcatt----gtacctcctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagtacagttttagcaa 48636012  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 9805485 - 9805434
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 258  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  9805485 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggc 9805434  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 35081660 - 35081601
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||    
T  35081660 aggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaat 35081601  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 35080283 - 35080341
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||||  |||||||    
T  35080283 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 35080341  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 23622040 - 23621990
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttgg 257  Q
    ||||||||||||||||||| || | ||| ||||||||||||| ||||||||    
T  23622040 aggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 27552451 - 27552510
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27552451 aggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 12812835 - 12812894
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||    
T  12812835 aggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 27553865 - 27553815
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 258  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| |||||||||    
T  27553865 ggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggc 27553815  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 10853200 - 10853155
Alignment:
Q  211 taaactacagttttgaccccttaaatttgccaatgttgtgattttg 256  Q
    |||||||||||||||||||||||| |||  |||||||| |||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttg 10853155  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 10851912 - 10851960
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgatttt 255  Q
    |||||||||||||||||||||||| ||| |||  |||||||| ||||||    
T  10851912 aggctaaactacagttttgaccccctaactttatcaatgttgcgatttt 10851960  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 8747690 - 8747749
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  8747690 aggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8747749  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 8749105 - 8749046
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||    
T  8749105 aggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 33997954 - 33997896
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||||| ||| ||||| ||||||| ||||||| | |||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaat 33997896  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 8897012 - 8896953
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||| || ||| ||||||||||||  ||||||||  |||||||    
T  8897012 aggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 124588 - 124529
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||    
T  124588 aggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 5504194 - 5504136
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaat 5504136  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 5502917 - 5502975
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||| ||||||| |||||||||||||  |||||||| |||||||    
T  5502917 aggctaaactacagttttga-cccttaagtttgccaatgttgcaattttggccccctaat 5502975  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 3598980 - 3598924
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 264  Q
    ||||||||||||||||||  ||| ||||||| ||||||||| ||||||||| |||||    
T  3598980 ggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 121348 - 121407
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||| |  |||||||||||||||||  |||||| | |||||||    
T  121348 aggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaat 121407  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 51220661 - 51220602
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||| || |||||||    
T  51220661 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat 51220602  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 10584140 - 10584082
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 32829740 - 32829798
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| |||||||    
T  32829740 ggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaat 32829798  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 26722533 - 26722589
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 264  Q
    |||||||||||||||||| |||| ||| ||| ||||||||| ||||||||| |||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 53157234 - 53157184
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 258  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||| ||||    
T  53157234 aggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggc 53157184  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 51219462 - 51219520
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||| | ||| |||| ||||||||  |||||||| |||||||    
T  51219462 ggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 32831149 - 32831100
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 256  Q
    |||||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  32831149 aggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||||||| |||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 3000272 - 3000223
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 256  Q
    |||||||||||||||||||||||||||| ||||  ||||||| |||||||    
T  3000272 aggctaaactacagttttgaccccttaattttgttaatgttgcgattttg 3000223  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 46525900 - 46525850
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 258  Q
    |||||| ||||||||||| |||| ||| ||||||||||||| |||||||||    
T  46525900 ggctaatctacagttttggccccctaagtttgccaatgttgcgattttggc 46525850  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 2999491 - 2999539
Alignment:
Q  208 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 256  Q
    ||||||||||||||||||||||  ||| |||| |||||||| |||||||    
T  2999491 ggctaaactacagttttgaccctctaactttgtcaatgttgcgattttg 2999539  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 13883927 - 13883878
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 256  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  13883927 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 38612218 - 38612275
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 264  Q
    |||||||||| ||||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  38612218 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 38613476 - 38613419
Alignment:
Q  207 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 264  Q
    |||||||||| ||||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  38613476 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 22417661 - 22417716
Alignment:
Q  211 taaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 266  Q
    |||||||||||||||||||| ||| ||||| ||||||  ||||||||| |||||||    
T  22417661 taaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

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